CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.13586.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.36 50.8 Gma.13586.1.S1_at CD401142 - - 1e+0 At3g48970 copper-binding family protein S.X. H.G.
0.44 63.3 GmaAffx.58165.1.S1_at BE473599 - - 5e-15 At2g34190 xanthine/uracil permease family protein S.X. H.G.
0.29 39.0 Gma.15574.1.S1_at BU765504 - - 2e-1 At1g52830 IAA6 (INDOLE-3-ACETIC ACID 6) S.X. H.G.
0.10 13.0 GmaAffx.22592.1.S1_at BG551397 - - 2e+0 At4g39630 unknown protein S.X. H.G.
0.06 9.0 Gma.6997.1.S1_at AW349716 Putative calmodulin-binding protein (CBP) - 2e-16 At5g62390 ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7) S.X. H.G.
0.02 4.5 GmaAffx.12485.1.S1_at BE347146 - - 4e-3 At5g08120 MBP2C (MICROTUBULE BINDING PROTEIN 2C) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
13.1 99.5 GSM258500 Soybean shoot apical meristem, 6 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
12.9 99.5 GSM258504 Soybean shoot apical meristem, 4 short-day replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
11.7 99.4 GSM267288 Axillary meristem from 10-day-old soybean seedlings repliacte 2 GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
10.3 99.3 GSM258501 Soybean shoot apical meristem, 1 short-day treatment replicate B GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
10.1 99.3 GSM258499 Soybean shoot apical meristem, 4 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
9.9 99.3 GSM258496 Vegetative soybean shoot apical meristem GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
9.5 99.2 GSM292229 25_C029.1B.R9B2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
9.4 99.2 GSM237068 Soy_shoot apical meristem GSE10607 Genome-wide analysis of gene expression in the soybean shoot apical meristem
9.4 99.2 GSM258497 Soybean Shoot Apical Meristem, 1 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
9.2 99.2 GSM293082 81_C019.1N.R9N1U, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 4e-1 36 GmaAffx.93656.1.S1_s_at AF055888.1 - - 2e+0 At5g56440 F-box family protein C.G. S.X.
0.02 4e-1 36 Gma.5799.1.S1_at BG511457 - - 7e-1 At2g14910 unknown protein C.G. S.X.
0.02 4e-1 36 Gma.5799.1.S1_a_at BG511457 - - 7e-1 At2g14910 unknown protein C.G. S.X.
0.01 2e+0 34 PsAffx.C3000224_at PsAffx.C3000224 - - 4e-2 At1g22220 F-box family protein C.G. S.X.
0.01 2e+0 34 GmaAffx.93309.1.S1_s_at CF808307 - - 1e-5 At4g22710 CYP706A2 C.G. S.X.
0.02 2e+0 34 Gma.4425.1.S1_a_at BQ297572 pyridoxine biosynthesis protein - 3e-19 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.02 2e+0 34 Gma.4425.1.S1_at BQ297572 pyridoxine biosynthesis protein - 3e-19 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) C.G. S.X.
0.03 2e+0 34 Gma.17974.1.S1_at AW508047 - - 6e+0 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.01 7e+0 32 PsAffx.C89000039_at PsAffx.C89000039 - - 1e+0 At4g30670 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At3g48970 824058 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBO - - - C.G. S.X.
0.05 2e+0 32 Hordeum vulgare HB28G01r_at HB28G01r - - 2e-1 At1g18760 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 2e+0 34 Oryza sativa Os.20051.1.S1_at - - - 0 C.G. S.X.
0.14 7e-6 52 Populus trichocarpa PtpAffx.21767.3.A1_at CV256188 hypothetical protein - 3e-5 At4g15140 unknown protein C.G. S.X.
0.03 3e-1 36 Triticum aestivum Ta.3799.2.S1_at BJ247870 - - 3e-1 At2g29540 ATRPC14 (RNA POLYMERASE 14 KDA SUBUNIT) C.G. S.X.
0.04 9e-2 36 Vitis vinifera 1620051_at CF211598 - - 3e+0 Atmg00480 - C.G. S.X.
0.03 2e+0 32 Zea mays Zm.9881.1.A1_at BM347704 hypothetical protein LOC100273660 - 3e-1 At4g17245 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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