CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.13520.1.A1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.13520.1.A1_at CD399653 - - 3e+0 At5g51860 MADS-box protein (AGL72) S.X. H.G.
0.36 50.8 GmaAffx.14280.1.S1_at BM095066 - - 1e-8 At1g22710 SUC2 (SUCROSE-PROTON SYMPORTER 2) S.X. H.G.
0.31 42.2 GmaAffx.14602.1.S1_at BM731566 - - 2e-1 At3g45851 unknown protein S.X. H.G.
0.27 35.7 PsAffx.psHB012xG08f_at PsAffx.psHB012xG08f - - 2e-1 At1g53580 GLY3 (GLYOXALASE II 3) S.X. H.G.
0.01 3.4 Gma.437.1.S1_s_at CD401627 Profilin, PRO2 - 1e-10 At2g19760 PRF1 (PROFILIN 1) S.X. H.G.
0.01 3.4 Gma.5883.1.S1_at CD396478 - - 7e-115 At3g19980 ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.0 99.7 GSM182044 Laser capture microdissected (LCM) inner integument at the heart stage, biological replicate 2 GSE7511 Expression data from soybean seed compartments with embryos at the heart stage
12.7 99.5 GSM292229 25_C029.1B.R9B2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.6 99.3 GSM294432 87_3176.2J.SLJ3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
10.4 99.3 GSM147947 Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3 GSE6414 Expression data from soybean seed compartments with embryos at the globular stage
9.5 99.2 GSM294431 86_2456.2J.R220P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.4 98.9 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
7.3 98.9 GSM294351 13_2475.2J.R081U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.3 98.9 GSM294350 12_2445.2J.R294L, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
7.3 98.9 GSM191090 Soybean_Cotyledon_OI2 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
7.3 98.9 GSM294473 3_3182.2K.V7K1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-2 38 GmaAffx.65255.1.A1_at BU545616 - - 1e-7 At1g76990 ACR3 C.G. S.X.
0.04 2e-1 36 GmaAffx.30961.1.S1_at BE608178 - - 2e-5 At4g35910 unknown protein C.G. S.X.
0.04 1e+0 34 HgAffx.11417.1.S1_at CB935033 - - 4e+0 At5g51812 unknown protein C.G. S.X.
0.06 1e+0 34 GmaAffx.41945.1.S1_at BM528194 - - 8e-7 At2g26710 BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1) C.G. S.X.
0.04 1e+0 34 GmaAffx.28699.1.S1_at BQ611165 - - 4e-9 At1g76990 ACR3 C.G. S.X.
0.06 1e+0 34 GmaAffx.2360.1.S1_at AI900277 - - 9e-10 At2g02820 MYB88 (myb domain protein 88) C.G. S.X.
0.04 1e+0 34 GmaAffx.14912.1.S1_at BQ612084 - - 6e-2 At1g42080 unknown protein C.G. S.X.
0.02 1e+0 34 Gma.6935.1.S1_at AW318268 - - 7e-19 At1g58230 WD-40 repeat family protein / beige-related C.G. S.X.
0.02 1e+0 34 Gma.6413.1.S1_at CD416470 - - 6e-13 At2g27040 AGO4 (ARGONAUTE 4) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 32 Arabidopsis thaliana At5g51860 835261 MADS-box protein (AGL72) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO - - - C.G. S.X.
0.04 1e+0 32 Hordeum vulgare HD08F16r_at HD08F16r - - 3e+0 At5g24520 TTG1 (TRANSPARENT TESTA GLABRA 1) C.G. S.X.
0.04 1e+0 34 Oryza sativa Os.57508.1.A1_at - - - 0 C.G. S.X.
0.05 1e+0 34 Populus trichocarpa PtpAffx.160207.1.A1_at CV242637 - - 4e+0 At5g03110 - C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.27600.1.S1_at CA673401 - - 1e+1 At3g21580 cobalt ion transmembrane transporter C.G. S.X.
0.05 8e-1 32 Vitis vinifera 1622358_s_at CF212311 hypothetical protein LOC100248535 - 7e-2 At2g28305 unknown protein C.G. S.X.
0.04 1e+0 32 Zea mays Zm.2291.1.S1_at AW331200 - - 3e+0 At1g32470 glycine cleavage system H protein, mitochondrial, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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