Gene omics information

Query gene ID	Gma.13295.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.1	Gma.13295.1.S1_at	CD412186	-	-	9e-46	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	S.X.	H.G.	Please select
0.61	81.8	Gma.10697.2.S1_at	AW424151	-	-	5e-22	At1g69960	PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.49094.1.S1_at	BG155160	-	-	2e-2	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	S.X.	H.G.	Please select
0.45	63.9	Gma.16655.1.S1_at	CD403138	-	-	6e-6	At2g41160	ubiquitin-associated (UBA)/TS-N domain-containing protein	S.X.	H.G.	Please select
0.44	63.3	Gma.8717.1.A1_s_at	BU761149	-	-	3e-117	At5g46630	clathrin adaptor complexes medium subunit family protein	S.X.	H.G.	Please select
0.43	60.6	Gma.2405.1.S1_at	BU546336	-	-	3e+0	At1g44835	YbaK/prolyl-tRNA synthetase family protein	S.X.	H.G.	Please select
0.39	54.5	Gma.11256.1.S1_at	CD401123	-	-	7e-28	At1g56450	PBG1	S.X.	H.G.	Please select
0.38	53.3	Gma.11232.1.S1_s_at	BI943460	-	-	0	At5g19990	RPT6A (REGULATORY PARTICLE TRIPLE-A ATPASE 6A)	S.X.	H.G.	Please select
0.32	43.7	GmaAffx.56354.2.S1_at	BI426749	-	-	2e-21	At3g03930	protein kinase-related	S.X.	H.G.	Please select
0.32	43.7	Gma.15883.1.S1_x_at	AF255338.1	20S proteasome subunit	-	2e-86	At1g53850	PAE1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	97.7	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.4	97.6	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.6	96.7	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.5	96.6	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.3	96.2	GSM209598	resistant_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
3.2	96.0	GSM209581	susceptible_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.9	95.4	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.9	95.4	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.4	93.8	GSM209588	susceptible_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
2.4	93.8	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.55	1e-131	470	Gma.7910.1.S1_at	BG352905	-	-	2e+0	At2g30766	unknown protein	C.G.	S.X.	Please select
0.22	5e-48	192	GmaAffx.12941.1.S1_at	BE823750	-	-	2e-14	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.10	7e-29	129	GmaAffx.87941.1.S1_at	BU926195	-	-	3e-85	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.02	2e-1	38	GmaAffx.87406.1.S1_at	BM528748	-	-	2e-97	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C40000041_at	PsAffx.C40000041	-	-	2e-1	At3g19900	unknown protein	C.G.	S.X.	Please select
0.02	3e+0	34	HgAffx.17457.1.S1_at	CB278899	-	-	1e-1	At4g25080	CHLM (magnesium-protoporphyrin IX methyltransferase)	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.66529.1.S1_at	BI498168	-	-	1e+0	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.51502.1.S1_at	BM094491	-	-	3e-6	At1g28960	ATNUDX15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15)	C.G.	S.X.	Please select
0.02	3e+0	34	Gma.7958.1.S1_at	BU551362	-	-	2e-6	At1g64080	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	9e-46	184	Arabidopsis thaliana	At5g53180	835399	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	Encodes one of the two polypyrimidine tract-binding (PTB) protein homologs in the Arabidopsis genome. Double mutants have defects in pollen germination.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	6e-2	38	Hordeum vulgare	Contig1730_s_at	Contig1730	-	-	4e-19	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.14	3e-19	97	Oryza sativa	Os08g0436000	AK067548.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e-32	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	1e-54	214	Populus trichocarpa	PtpAffx.27193.1.A1_at	CV272397	hypothetical protein	-	2e-23	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	1e-11	71	Triticum aestivum	Ta.4729.1.S1_at	BJ273107	-	-	1e-27	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.09	2e-25	115	Vitis vinifera	1612771_at	CF210342	-	-	5e-16	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	C.G.	S.X.	Please select
0.14	6e-8	57	Zea mays	Zm.10060.1.A1_at	CK371531	hypothetical protein LOC100217199	-	9e-18	At3g01150	PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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