CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.13221.2.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 Gma.13221.2.S1_at BU082968 - - 1e+0 At1g51390 NFU5 S.X. H.G.
0.40 57.1 GmaAffx.77917.1.S1_at BU965283 - - 1e-26 At5g13260 unknown protein S.X. H.G.
0.38 53.3 GmaAffx.75246.1.S1_at AW508335 - - 2e-14 At1g60800 NIK3 (NSP-INTERACTING KINASE 3) S.X. H.G.
0.33 46.1 GmaAffx.52789.1.S1_at AW203783 - - 2e-10 At2g20990 SYTA (SYNAPTOTAGMIN A) S.X. H.G.
0.31 42.2 GmaAffx.92474.1.S1_s_at CF808199 - - 5e-139 At2g29550 TUB7 S.X. H.G.
0.25 32.6 GmaAffx.83370.1.S1_at BQ080389 - - 1e-8 At5g25510 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative S.X. H.G.
0.11 14.2 Gma.13220.2.S1_at BM521567 - - 7e-11 At5g23550 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.8 97.9 GSM293526 42_2022.2A.R275P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5 97.7 GSM293952 9_3078.2E.SLE1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2 97.4 GSM293882 33_3082.2E.SLE2P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9 97.1 GSM294405 62_3164.2J.SLJ1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8 97.0 GSM309530 storage protein suppression expt, RNAi biol rep2, tech rep1 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.7 96.8 GSM294045 94_2250.2F.R268P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7 96.8 GSM293557 70_2036.2A.R165P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6 96.7 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5 96.6 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.5 96.6 GSM293264 4_C058.1P.R9P1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 1e-23 111 Gma.13221.1.A1_at BE819862 - - 6e+0 At5g52140 protein binding / zinc ion binding C.G. S.X.
0.03 5e-1 36 GmaAffx.58511.1.S1_at AW309189 - - 5e-16 At2g18280 AtTLP2 (TUBBY LIKE PROTEIN 2) C.G. S.X.
0.03 2e+0 34 HgAffx.8164.1.S1_at CB380337 - - 1e+0 At1g75335 unknown protein C.G. S.X.
0.04 2e+0 34 HgAffx.14157.1.S1_at CB374214 - - 6e+0 At5g23170 protein kinase family protein C.G. S.X.
0.02 2e+0 34 GmaAffx.64556.1.S1_at BU549363 - - 6e-28 At5g49880 mitotic checkpoint family protein C.G. S.X.
0.02 7e+0 32 PsAffx.C345000001_at PsAffx.C345000001 - - 3e+0 At1g23660 unknown protein C.G. S.X.
0.01 7e+0 32 PsAffx.C241000012_at PsAffx.C241000012 - - 4e+0 At5g27440 unknown protein C.G. S.X.
0.01 7e+0 32 PsAffx.C135000006_at PsAffx.C135000006 - - 7e+0 At2g47540 pollen Ole e 1 allergen and extensin family protein C.G. S.X.
0.02 7e+0 32 GmaAffx.86202.1.S1_at AW317407 - - 3e-2 At4g38490 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 34 Arabidopsis thaliana At1g51390 841563 NFU5 Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU4 than to NFU1,2, and 3. Targeted to the mitochondrion. - - - C.G. S.X.
0.03 4e-2 38 Hordeum vulgare Contig25039_at Contig25039 - - 5e+0 At5g49710 unknown protein C.G. S.X.
0.02 3e+0 34 Oryza sativa OsAffx.24787.1.S1_at - - - 0 C.G. S.X.
0.09 8e-12 71 Populus trichocarpa PtpAffx.203524.1.S1_at pmrna7004 hypothetical protein - 5e+0 At3g63530 BB (BIG BROTHER) C.G. S.X.
0.03 1e+0 34 Triticum aestivum Ta.7743.2.S1_at BJ317565 - - 4e+0 At5g19850 hydrolase, alpha/beta fold family protein C.G. S.X.
0.03 6e+0 30 Vitis vinifera 1620620_at CF206142.1 - - 6e-2 At4g27480 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein C.G. S.X.
0.03 6e-1 34 Zea mays ZmAffx.1527.1.S1_at 40794996-123 - - 8e-1 At3g13710 PRA1.F4 (PRENYLATED RAB ACCEPTOR 1.F4) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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