CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.13129.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.44 63.3 Gma.13129.1.S1_at CD404336 - - 2e-62 At5g17170 ENH1 (enhancer of sos3-1) S.X. H.G.
0.80 91.5 GmaAffx.91387.1.S1_s_at CF807112 - - 2e-26 At1g62750 SCO1 (SNOWY COTYLEDON 1) S.X. H.G.
0.67 86.1 Gma.4553.1.A1_at BU081133 - - 1e-48 At1g52510 hydrolase, alpha/beta fold family protein S.X. H.G.
0.61 81.8 Gma.10987.2.S1_a_at AW348351 - - 3e-133 At2g39730 RCA (RUBISCO ACTIVASE) S.X. H.G.
0.60 80.7 GmaAffx.91387.1.S1_at CF807112 - - 2e-26 At1g62750 SCO1 (SNOWY COTYLEDON 1) S.X. H.G.
0.40 57.1 Gma.16678.1.S1_at BG370155 - - 1e-1 At4g03520 ATHM2 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
169.0 100.0 GSM209580 resistant_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
120.1 100.0 GSM209581 susceptible_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
96.8 100.0 GSM238041 Soybean-Bayfield-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
94.9 100.0 GSM245938 Leaf_LCO treated_Rep 3_48 h After Treatment GSE9730 Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
85.1 100.0 GSM238060 Soybean-S03W4-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
79.3 100.0 GSM245937 Leaf_LCO treated_Rep 2_48 h After Treatment GSE9730 Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
78.5 100.0 GSM209582 mock_0hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
78.0 100.0 GSM209599 susceptible_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
76.8 100.0 GSM170926 Rust Innoculated, biological rep1 GSE7108 Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
75.3 100.0 GSM238053 Soybean-PS46R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 2e-1 38 PsAffx.C169000007_at PsAffx.C169000007 - - 2e-1 At1g15520 PDR12 (PLEIOTROPIC DRUG RESISTANCE 12) C.G. S.X.
0.03 2e-1 38 GmaAffx.63464.1.S1_at BG156739 - - 2e+0 At5g10140 FLC (FLOWERING LOCUS C) C.G. S.X.
0.01 3e+0 34 PsAffx.C29000060_at PsAffx.C29000060 - - 1e+1 At5g63440 unknown protein C.G. S.X.
0.01 3e+0 34 PsAffx.C234000008_at PsAffx.C234000008 - - 7e-1 At4g27800 protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1) C.G. S.X.
0.02 3e+0 34 HgAffx.5334.1.S1_at CD748090 - - 5e+0 At4g36060 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.02 3e+0 34 HgAffx.13191.1.S1_at CD748733 - - 4e+0 At4g28360 ribosomal protein L22 family protein C.G. S.X.
0.02 3e+0 34 GmaAffx.91535.1.S1_s_at CF807260 glutathione S-transferase GST 25 - 4e+0 At5g16950 unknown protein C.G. S.X.
0.02 3e+0 34 Gma.8362.1.S1_at BU550790 - - 5e+0 At5g67390 unknown protein C.G. S.X.
0.02 3e+0 34 Gma.8123.1.S1_at AF243380.1 glutathione S-transferase GST 25 - 1e-1 At2g02380 ATGSTZ2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.42 2e-62 240 Arabidopsis thaliana At5g17170 831581 ENH1 (enhancer of sos3-1) F:protein binding, electron carrier activity, metal ion binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;BPO - - - C.G. S.X.
0.25 6e-30 131 Hordeum vulgare Contig4014_at Contig4014 - - 5e-10 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.23 1e-21 105 Oryza sativa Os08g0162600 AK060121.1 - Rubredoxin-type Fe(Cys)4 protein family protein 6e-22 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.42 1e-39 165 Populus trichocarpa PtpAffx.133398.1.A1_at CV278665 hypothetical protein - 8e-27 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.19 9e-34 145 Triticum aestivum Ta.5590.2.S1_at CK214552 - - 7e-7 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.23 4e-73 274 Vitis vinifera 1610210_at CA812095 hypothetical protein LOC100263114 - 8e-28 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
0.23 2e-23 109 Zea mays Zm.3400.1.S1_at CN845120 - - 2e-9 At5g17170 ENH1 (enhancer of sos3-1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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