Gene omics information

Query gene ID	Gma.1278.1.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.3	Gma.1278.1.S1_a_at	BE020433	-	-	4e-20	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.93393.1.S1_s_at	CF808604	ascorbate peroxidase 1, cytosolic /// L-ascorbate peroxidase 2	-	6e-22	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select
0.55	76.3	Gma.5244.3.S1_a_at	BM893397	-	-	1e-32	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please select
0.46	65.5	Gma.17053.5.S1_s_at	BM309062	glyceraldehyde-3-phosphate dehydrogenase /// glyceraldehyde-3-dehydrogenase C subunit	-	2e-48	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.92483.1.S1_s_at	CF808208	-	-	2e-39	At5g03290	isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative	S.X.	H.G.	Please select
0.40	57.1	GmaAffx.59019.1.S1_at	AW133348	-	-	1e-136	Atmg00160	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.2	98.1	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293409	91_C083.1Q.V7Q2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293311	92_C061.1P.SLP2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM293595	26_2077.2B.R246U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM244916	4_SLO.I3U1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.2	96.0	GSM244788	12_V71.M1W1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.1	95.8	GSM293539	54_3007.2A.SLA2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293508	26_2015.2A.R250U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293558	71_3013.2A.SLA3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM292889	64_1477.1L.R289U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	1406	Gma.1278.1.S1_x_at	BE020433	-	-	4e-20	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	C.G.	S.X.	Please select
0.66	0	1086	Gma.1278.2.S1_s_at	CA937409	-	-	1e-21	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	C.G.	S.X.	Please select
0.66	0	1086	Gma.1278.2.S1_at	CA937409	-	-	1e-21	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	C.G.	S.X.	Please select
0.00	1e-2	42	GmaAffx.93646.1.S1_at	AY216010.1	-	-	8e-2	At4g21065	-	C.G.	S.X.	Please select
0.03	4e-2	40	PsAffx.CL898Contig1_at	PsAffx.CL898Contig1	-	-	2e+1	At5g59990	-	C.G.	S.X.	Please select
0.03	4e-2	40	HgAffx.18094.1.S1_at	CB238600	-	-	9e-1	At4g07786	unknown protein	C.G.	S.X.	Please select
0.02	4e-2	40	Gma.15820.1.S1_at	BU546513	-	-	1e-8	At1g64770	NDF2 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	C.G.	S.X.	Please select
0.02	4e-2	40	Gma.15820.1.S1_a_at	BU546513	-	-	1e-8	At1g64770	NDF2 (NDH-DEPENDENT CYCLIC ELECTRON FLOW 1)	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.CL513Contig1_at	PsAffx.CL513Contig1	-	-	3e-2	At5g11600	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.14	4e-20	99	Arabidopsis thaliana	At1g03900	839378	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.33	3e-71	268	Hordeum vulgare	Contig8531_at	Contig8531	-	-	2e-13	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	C.G.	S.X.	Please select
0.35	2e-103	377	Oryza sativa	Os10g0476000	AK065629.1	-	Conserved hypothetical protein	1e-14	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	1e-23	111	Populus trichocarpa	Ptp.5837.1.S1_at	CA821481	ABC transporter family protein	-	1e-19	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.34	3e-79	295	Triticum aestivum	Ta.3797.1.S1_a_at	CK214587	-	-	5e-11	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	C.G.	S.X.	Please select
0.43	1e-44	178	Vitis vinifera	1614591_at	CF216033	hypothetical protein LOC100254924	-	7e-19	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	C.G.	S.X.	Please select
0.34	4e-86	317	Zea mays	Zm.5635.1.A1_at	AY111142.1	hypothetical protein LOC100192009	-	3e-18	At1g03900	ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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