Gene omics information

Query gene ID	Gma.12512.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	92.5	Gma.12512.1.S1_at	CD392421	-	-	1e+0	At1g11608	-	S.X.	H.G.	Please select
0.22	28.1	GmaAffx.83815.1.S1_s_at	BG404904	-	-	1e+0	At1g04330	unknown protein	S.X.	H.G.	Please select
0.04	7.0	Gma.8354.1.S1_at	BE658968	-	-	4e-22	At3g03070	NADH-ubiquinone oxidoreductase-related	S.X.	H.G.	Please select
0.03	5.8	Gma.6495.1.S1_at	BQ612701	-	-	5e-51	At3g25800	PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)	S.X.	H.G.	Please select
0.01	3.4	Gma.5868.1.S1_at	BU084222	-	-	7e-10	At1g19650	SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative	S.X.	H.G.	Please select
0.01	3.4	GmaAffx.89191.1.A1_x_at	CK606438	-	-	1e-20	At3g08520	60S ribosomal protein L41 (RPL41D)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.5	99.1	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
8.1	99.0	GSM308556	Mature Soybean (Glycine max) pollen grains replicate 1	GSE12286	Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
7.2	98.9	GSM292838	18_C211.1L.SLL3L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.8	98.4	GSM292230	28_1045.1B.R025L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM293082	81_C019.1N.R9N1U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.3	97.5	GSM244909	3_VP9.I3L2.CEL, Experimental replicate 2	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.9	97.1	GSM294438	92_2469.2J.R237L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM170928	V2 Control, biological rep3	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
3.8	97.0	GSM292852	30_1463.1L.R282L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	6e-31	135	Gma.13646.1.A1_at	BU550033	-	-	3e-4	At3g09085	unknown protein	C.G.	S.X.	Please select
0.03	1e-1	38	Gma.4269.2.S1_a_at	BU083811	-	-	8e-17	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.02	1e-1	38	Gma.4269.1.S1_at	CD407626	-	-	8e-37	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.02	4e-1	36	PsAffx.C43000055_at	PsAffx.C43000055	-	-	9e+0	At4g30410	transcription factor	C.G.	S.X.	Please select
0.02	4e-1	36	PsAffx.C173000018_at	PsAffx.C173000018	-	-	3e+0	At2g17350	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.CL688Contig1_at	PsAffx.CL688Contig1	-	-	1e-2	At5g03330	OTU-like cysteine protease family protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C94000003_at	PsAffx.C94000003	-	-	2e-2	At1g02580	MEA (MEDEA)	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C330000006_at	PsAffx.C330000006	-	-	7e+0	At5g65350	histone H3	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.90168.1.S1_at	CF805893	-	-	5e-3	At2g36760	UGT73C2 (UDP-glucosyl transferase 73C2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At1g11608	6240907	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	32	Hordeum vulgare	HY02J15u_at	HY02J15u	-	-	5e+0	At2g46780	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	OsAffx.3014.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.09	7e-3	42	Populus trichocarpa	PtpAffx.7362.1.A1_at	CV248778	-	-	3e-14	At3g09085	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	32	Triticum aestivum	TaAffx.111984.1.S1_x_at	CA628972	-	-	2e+0	At5g27450	MK (MEVALONATE KINASE)	C.G.	S.X.	Please select
0.10	4e-16	83	Vitis vinifera	1615154_at	CF209662	hypothetical protein LOC100251043	-	8e-6	At3g09085	unknown protein	C.G.	S.X.	Please select
0.04	8e+0	30	Zea mays	Zm.8927.1.S1_at	BQ578253	-	-	5e-3	At2g41905	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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