CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.12419.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.81 91.7 Gma.12419.1.S1_at CD393312 - - 1e-23 At2g16710 hesB-like domain-containing protein S.X. H.G.
0.84 92.6 Gma.5163.2.S1_at BG653608 - - 1e-4 At4g12000 - S.X. H.G.
0.77 90.3 Gma.1005.1.S1_at CD392954 - - 3e-77 At3g54840 ARA6 S.X. H.G.
0.71 87.8 Gma.8400.1.S1_at BQ612392 - - 4e-23 At1g14290 SBH2 (SPHINGOID BASE HYDROXYLASE 2) S.X. H.G.
0.69 86.8 Gma.1559.1.S1_at CD394386 - - 3e-5 At1g69230 SP1L2 (SPIRAL1-LIKE2) S.X. H.G.
0.56 78.2 GmaAffx.91407.1.S1_s_at CF807132 - - 2e+0 At5g23760 heavy-metal-associated domain-containing protein S.X. H.G.
0.52 73.1 Gma.4443.1.S1_at AW348382 - - 6e+0 At5g23903 unknown protein S.X. H.G.
0.51 72.3 Gma.12713.1.S1_at AW348108 - - 6e-16 At1g12360 KEU (keule) S.X. H.G.
0.51 72.3 Gma.1413.1.S1_a_at AW734487 - - 8e-37 At1g15880 GOS11 (golgi snare 11) S.X. H.G.
0.50 71.7 Gma.3852.1.S1_at CD399104 - - 8e-75 At5g27840 TOPP8 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
159.3 100.0 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
155.1 100.0 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
146.6 100.0 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
7.0 98.8 GSM209597 susceptible_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.6 98.7 GSM209596 resistant_24hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.5 98.7 GSM209590 susceptible_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.8 98.4 GSM209587 resistant_24hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.2 98.1 GSM209592 resistant_6hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.8 97.9 GSM209591 mock_0hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.2 97.4 GSM209573 mock_0hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 7e-1 36 PsAffx.C129000017_at PsAffx.C129000017 - - 5e-2 At5g47550 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.00 3e+0 34 PsAffx.C90000030_at PsAffx.C90000030 - - 2e-2 At3g63130 RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1) C.G. S.X.
0.03 3e+0 34 GmaAffx.35842.1.A1_at BF424416 - - 9e-1 At1g12064 unknown protein C.G. S.X.
0.03 3e+0 34 GmaAffx.19960.1.S1_at BU765961 - - 8e-1 At3g25014 unknown protein C.G. S.X.
0.01 3e+0 34 Gma.13971.1.S1_at CD412065 - - 8e-22 At5g20520 WAV2 (WAVY GROWTH 2) C.G. S.X.
0.02 1e+1 32 PsAffx.psHB030xO02f_s_at PsAffx.psHB030xO02f - - 7e-1 At1g09220 pentatricopeptide (PPR) repeat-containing protein C.G. S.X.
0.01 1e+1 32 PsAffx.C90000046_at PsAffx.C90000046 - - 2e+0 At2g27920 SCPL51 (SERINE CARBOXYPEPTIDASE-LIKE 51) C.G. S.X.
0.01 1e+1 32 PsAffx.C8000125_at PsAffx.C8000125 - - 2e+0 At4g29120 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein C.G. S.X.
0.01 1e+1 32 PsAffx.C7000219_at PsAffx.C7000219 - - 2e+0 At5g22070 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 1e-23 111 Arabidopsis thaliana At2g16710 816172 hesB-like domain-containing protein F:iron-sulfur cluster binding, structural molecule activity;P:iron-sulfur cluster assembly;C:unknown;OBMFPA - - - C.G. S.X.
0.08 4e-9 61 Hordeum vulgare Contig12425_at Contig12425 - - 4e-4 At2g16710 hesB-like domain-containing protein C.G. S.X.
0.23 8e-29 129 Oryza sativa Os01g0105800 AK066672.1 - Conserved hypothetical protein 4e-4 At2g36260 iron-sulfur cluster assembly complex protein, putative C.G. S.X.
0.23 7e-41 169 Populus trichocarpa PtpAffx.209533.1.S1_s_at pmrna18889 hypothetical protein - 1e-31 At2g16710 hesB-like domain-containing protein C.G. S.X.
0.02 8e+0 32 Triticum aestivum Ta.535.1.S1_at BE605168 - - 3e+0 At1g63800 UBC5 (ubiquitin-conjugating enzyme 5) C.G. S.X.
0.26 6e-78 289 Vitis vinifera 1613987_s_at CA818361 hypothetical protein LOC100245893 - 3e-29 At2g16710 hesB-like domain-containing protein C.G. S.X.
0.02 3e+0 32 Zea mays Zm.4685.1.A1_at AI737985 - - 3e+0 At4g37780 MYB87 (MYB DOMAIN PROTEIN 87) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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