Gene omics information

Query gene ID	Gma.12365.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.72	88.1	Gma.12365.1.S1_at	BE657436	-	-	1e-16	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	S.X.	H.G.	Please select
0.93	99.1	Gma.2185.3.S1_at	BM887146	-	-	5e-6	At3g25230	ROF1 (ROTAMASE FKBP 1)	S.X.	H.G.	Please select
0.92	98.9	Gma.6606.1.S1_at	AW395303	-	-	8e-64	At5g52640	ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)	S.X.	H.G.	Please select
0.92	98.9	GmaAffx.69544.2.S1_at	AW569786	-	-	2e-2	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	S.X.	H.G.	Please select
0.89	93.5	GmaAffx.49167.1.S1_at	BE583765	-	-	2e-1	At5g59530	2-oxoglutarate-dependent dioxygenase, putative	S.X.	H.G.	Please select
0.86	93.0	Gma.7766.1.S1_at	BU550058	-	-	6e-3	At5g12020	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	S.X.	H.G.	Please select
0.84	92.6	GmaAffx.21211.1.S1_s_at	BU550606	-	-	3e-78	At5g52640	ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)	S.X.	H.G.	Please select
0.83	92.5	GmaAffx.72322.1.S1_at	AW570011	-	-	2e-12	At5g48570	peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative	S.X.	H.G.	Please select
0.78	90.6	GmaAffx.92386.1.S1_at	CF808111	-	-	4e-77	At5g52640	ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)	S.X.	H.G.	Please select
0.78	90.6	Gma.17947.1.S1_at	AW568567	-	-	7e-18	At3g46230	ATHSP17.4	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
474.5	100.0	GSM170929	Rust Innoculated, biological rep3	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
356.6	100.0	GSM170927	Rust Innoculated, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
196.2	100.0	GSM170928	V2 Control, biological rep3	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
175.9	100.0	GSM170925	V2 Control, biological rep2	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
122.9	100.0	GSM170924	V2 Control, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
122.1	100.0	GSM170926	Rust Innoculated, biological rep1	GSE7108	Gene expression analysis in soybean with respect to Pahakopsora pachyrhizii at V2 growth stage
75.3	100.0	GSM309344	transgenic RNAiOleosin, biol rep 1, tech rep 2	GSE12300	Suppression of oleosin in soybean cotyledon
67.0	100.0	GSM309341	Wild type 1	GSE12300	Suppression of oleosin in soybean cotyledon
64.9	100.0	GSM309343	transgenic RNAiOleosin, biol rep 1, tech rep 1	GSE12300	Suppression of oleosin in soybean cotyledon
56.5	99.9	GSM309342	Wild type 2	GSE12300	Suppression of oleosin in soybean cotyledon

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	638	GmaAffx.90913.1.S1_s_at	CF806638	-	-	1e-9	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select
0.57	9e-145	513	GmaAffx.92420.1.S1_s_at	CF808145	-	-	3e-7	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please select
0.44	4e-144	511	Gma.12365.3.S1_at	AW567705	-	-	1e-7	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please select
0.61	4e-141	502	Gma.16005.1.S1_at	CD409510	-	-	4e-13	At5g59720	HSP18.2 (heat shock protein 18.2)	C.G.	S.X.	Please select
0.49	3e-123	442	GmaAffx.93268.1.S1_at	CF807875	-	-	2e-9	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please select
0.49	3e-123	442	GmaAffx.93268.1.S1_s_at	CF807875	-	-	2e-9	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please select
0.45	4e-110	398	GmaAffx.69311.1.S1_at	AW620208	-	-	4e-16	At5g59720	HSP18.2 (heat shock protein 18.2)	C.G.	S.X.	Please select
0.49	2e-105	383	Gma.17947.1.S1_at	AW568567	-	-	7e-18	At3g46230	ATHSP17.4	C.G.	S.X.	Please select
0.49	1e-82	307	GmaAffx.89896.1.S1_at	CF805621	-	-	2e-26	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	1e-16	87	Arabidopsis thaliana	At1g53540	841789	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	F:unknown;P:response to heat;C:cellular_component unknown;BPOFAM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.28	3e-16	85	Hordeum vulgare	Contig2006_s_at	Contig2006	-	-	4e-26	At3g46230	ATHSP17.4	C.G.	S.X.	Please select
0.19	4e-12	73	Oryza sativa	Os01g0136000	9629.m00355	-	16.9 kDa class I heat shock protein	1e-5	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.36	2e-47	190	Populus trichocarpa	PtpAffx.14337.3.S1_at	BU890078	-	-	6e-3	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.17	3e-14	79	Triticum aestivum	Ta.27661.1.S1_at	AJ614980	heat shock protein 16.9	-	5e-19	At3g46230	ATHSP17.4	C.G.	S.X.	Please select
0.30	7e-28	123	Vitis vinifera	1612385_at	CB350287	hypothetical protein LOC100244376	-	5e-16	At2g29500	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	C.G.	S.X.	Please select
0.20	9e-16	83	Zea mays	Zm.2361.1.A1_at	BM381388	hypothetical protein LOC100191552	-	3e-17	At1g53540	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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