CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.12342.1.S1_s_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.6 Gma.12342.1.S1_s_at CD405864 - - 3e-6 At5g11420 - S.X. H.G.
0.69 86.8 Gma.1316.5.S1_at BF067733 - - 4e-12 At4g12800 PSAL (photosystem I subunit L) S.X. H.G.
0.61 81.8 Gma.1316.2.S1_a_at CD417424 - - 4e-14 At4g12800 PSAL (photosystem I subunit L) S.X. H.G.
0.54 74.8 Gma.1316.5.S1_x_at BF067733 - - 4e-12 At4g12800 PSAL (photosystem I subunit L) S.X. H.G.
0.54 74.8 Gma.11116.3.S1_s_at CD394432 - - 1e-7 At1g08380 PSAO (photosystem I subunit O) S.X. H.G.
0.52 73.1 Gma.17979.1.S1_x_at CD412817 - - 5e-2 At2g13570 NF-YB7 (NUCLEAR FACTOR Y, SUBUNIT B7) S.X. H.G.
0.51 72.3 GmaAffx.1301.70.S1_s_at BE210977 - - 1e+1 At1g04980 ATPDIL2-2 (PDI-LIKE 2-2) S.X. H.G.
0.49 68.3 Gma.1316.5.S1_a_at BF067733 - - 4e-12 At4g12800 PSAL (photosystem I subunit L) S.X. H.G.
0.47 66.6 Gma.16419.1.A1_at BM142992 - - 2e-2 At2g45180 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.47 66.6 Gma.16838.1.S1_x_at CD406104 - - 6e-15 At1g52230 PSAH2 (PHOTOSYSTEM I SUBUNIT H2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
165.3 100.0 GSM238053 Soybean-PS46R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
153.8 100.0 GSM238039 Soybean-Bayfield-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
133.5 100.0 GSM238038 Soybean-Bayfield-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
129.0 100.0 GSM238052 Soybean-PS46R-1-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
123.1 100.0 GSM238050 Soybean-Mandarin-6-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
123.0 100.0 GSM238041 Soybean-Bayfield-4-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
113.4 100.0 GSM238031 Soybean-2601R-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
108.2 100.0 GSM238043 Soybean-Bayfield-5-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
100.7 100.0 GSM238033 Soybean-2601R-5-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
93.6 100.0 GSM238058 Soybean-S03W4-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.80 0 1582 Gma.12342.3.S1_at BQ081225 - - 1e-5 At5g25460 unknown protein C.G. S.X.
0.11 3e-47 190 GmaAffx.4914.1.S1_s_at BI968080 - - 4e+0 At5g15560 unknown protein C.G. S.X.
0.26 3e-44 180 GmaAffx.50654.1.A1_at BI970671 - - 2e-1 At5g25460 unknown protein C.G. S.X.
0.13 7e-5 50 GmaAffx.12054.1.S1_at BE806816 - - 9e-2 At5g25460 unknown protein C.G. S.X.
0.09 1e-3 46 GmaAffx.34975.1.S1_at BU547817 - - 5e-8 At5g25460 unknown protein C.G. S.X.
0.02 4e-3 44 Gma.18074.1.S1_at BU549560 - - 3e+0 At4g12110 SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1) C.G. S.X.
0.01 1e+0 36 PsAffx.C12000097_at PsAffx.C12000097 - - 1e-1 At2g01300 unknown protein C.G. S.X.
0.02 4e+0 34 PsAffx.psHB005xD03f_at PsAffx.psHB005xD03f - - 3e-1 At3g58660 60S ribosomal protein-related C.G. S.X.
0.02 4e+0 34 PsAffx.CL105Contig2_at PsAffx.CL105Contig2 - - 2e+1 At5g11930 glutaredoxin family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-6 54 Arabidopsis thaliana At5g11420 831013 - F:molecular_function unknown;P:biological_process unknown;C:cell wall, plant-type cell wall;P - - - C.G. S.X.
0.06 2e+0 34 Hordeum vulgare Contig2474_at Contig2474 - - 2e-1 At1g80240 unknown protein C.G. S.X.
0.07 2e-3 46 Oryza sativa Os01g0611000 AK072500.1 - Protein of unknown function DUF642 family protein 3e+0 At1g10790 - C.G. S.X.
0.27 5e-12 73 Populus trichocarpa PtpAffx.736.1.S1_at CV236187 hypothetical protein - 2e-4 At5g11420 - C.G. S.X.
0.08 2e-4 48 Triticum aestivum Ta.9151.1.S1_x_at CK215909 - - 1e+1 At1g71780 unknown protein C.G. S.X.
0.19 1e-49 196 Vitis vinifera 1619831_a_at BQ794924 hypothetical protein LOC100252479 - 6e-10 At4g32460 - C.G. S.X.
0.02 1e+0 34 Zea mays Zm.16593.9.S1_x_at AI657431 Hypothetical protein LOC100192949 - 1e-2 At5g15520 40S ribosomal protein S19 (RPS19B) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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