Gene omics information

Query gene ID Gma.12238.1.S1_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.5678.2Gma.12238.1.S1_atAW596295--2e-16At1g45474LHCA5S.X.H.G.
0.6786.1Gma.12909.1.A1_atCD400254--9e-21At5g17670hydrolase, acting on ester bondsS.X.H.G.
0.4360.6Gma.1389.1.S1_atCD407055--4e-48At1g78630emb1473 (embryo defective 1473)S.X.H.G.
0.3548.6Gma.5539.1.S1_a_atCD403805--9e-6At4g02530chloroplast thylakoid lumen proteinS.X.H.G.
0.3142.2Gma.5539.1.S1_atCD403805--9e-6At4g02530chloroplast thylakoid lumen proteinS.X.H.G.
0.2430.9Gma.9972.1.S1_atCD400396--9e-90At5g30510RPS1 (RIBOSOMAL PROTEIN S1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
137.6100.0GSM238049Soybean-Mandarin-4-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
118.1100.0GSM238048Soybean-Mandarin-3-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
110.2100.0GSM209582mock_0hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
107.3100.0GSM245938Leaf_LCO treated_Rep 3_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
102.3100.0GSM238051Soybean-Mandarin-7-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
90.8100.0GSM209581susceptible_48hours_rep1GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
83.2100.0GSM245937Leaf_LCO treated_Rep 2_48 h After TreatmentGSE9730Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
82.9100.0GSM238047Soybean-Mandarin-1-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
77.4100.0GSM238050Soybean-Mandarin-6-RMAGSE9374Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
74.5100.0GSM209590susceptible_48hours_rep2GSE8432Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.403e-90333Gma.12238.2.S1_atBI424159--9e-7At1g45474LHCA5C.G.S.X.
0.132e-1791GmaAffx.57857.1.A1_atBU545635--6e+0At5g56990-C.G.S.X.
0.022e-138Gma.15874.1.S1_atCD397659--3e-18At3g44890RPL9 (RIBOSOMAL PROTEIN L9)C.G.S.X.
0.029e-136GmaAffx.87179.1.S1_atBQ612559--1e-35At5g53350CLPXC.G.S.X.
0.029e-136GmaAffx.42516.1.A1_atBU546094--2e+0At3g13500unknown proteinC.G.S.X.
0.029e-136Gma.3124.2.A1_atBM731503--8e-1At5g49240APRR4 (PSEUDO-RESPONSE REGULATOR 4)C.G.S.X.
0.013e+034PsAffx.C68000019_s_atPsAffx.C68000019--2e+0At3g50730protein kinase, putativeC.G.S.X.
0.013e+034PsAffx.C13000128_atPsAffx.C13000128--2e+0At2g01970endomembrane protein 70, putativeC.G.S.X.
0.023e+034GmaAffx.48363.1.S1_atCD414885--2e+0At5g42860unknown proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.232e-1687Arabidopsis thalianaAt1g45474841099LHCA5Encodes a component of the light harvesting complex of photosystem I.---C.G.S.X.
0.101e-1273Hordeum vulgareContig7863_atContig7863--6e+0At5g28450chlorophyll A-B binding protein, chloroplast, putative / LHCI type II CAB, putativeC.G.S.X.
0.052e-242Oryza sativaOs02g0764500AK066291.1-Lhca5 protein8e-3At1g45474LHCA5C.G.S.X.
0.261e-24115Populus trichocarpaPtp.7044.1.S1_atDN489077light-harvesting complex I protein Lhca5-4e-11At1g45474LHCA5C.G.S.X.
0.143e-344Triticum aestivumTa.881.1.S1_atCK213344--9e+0At4g24974-C.G.S.X.
0.293e-43174Vitis vinifera1611464_atCF215949hypothetical protein LOC100255844-2e-8At1g45474LHCA5C.G.S.X.
0.024e+032Zea maysZm.11940.1.A1_atBM382011--4e+0At1g51090heavy-metal-associated domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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