Gene omics information

Query gene ID	Gma.1221.1.S1_s_at
Gene name	nitrate reductase
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	93.0	Gma.1221.1.S1_s_at	L23854.1	nitrate reductase	-	4e-10	At1g77760	NIA1 (NITRATE REDUCTASE 1)	S.X.	H.G.	Please select
0.89	93.5	Gma.8416.1.S1_at	U13987.1	Inducible nitrate reductase 2 (INR2)	-	1e-10	At1g77760	NIA1 (NITRATE REDUCTASE 1)	S.X.	H.G.	Please select
0.73	88.9	Gma.9265.1.S1_at	BU551320	-	-	6e-6	At4g28700	AMT1	S.X.	H.G.	Please select
0.67	86.1	Gma.3446.1.S1_at	CD417013	-	-	1e-11	At3g19900	unknown protein	S.X.	H.G.	Please select
0.64	83.4	Gma.13372.1.S1_at	CD392643	-	-	1e-29	At4g09350	DNAJ heat shock N-terminal domain-containing protein	S.X.	H.G.	Please select
0.53	74.2	GmaAffx.67137.1.S1_at	BE331665	-	-	4e+0	At5g26890	unknown protein	S.X.	H.G.	Please select
0.51	72.3	Gma.13913.1.A1_at	CD412472	-	-	3e-1	At3g03350	binding / catalytic/ oxidoreductase	S.X.	H.G.	Please select
0.49	68.3	Gma.12759.1.S1_at	CD396841	-	-	6e-9	At2g42975	unknown protein	S.X.	H.G.	Please select
0.48	67.7	Gma.16015.1.S1_s_at	CD411020	-	-	5e-34	At2g05620	PGR5 (proton gradient regulation 5)	S.X.	H.G.	Please select
0.45	63.9	Gma.13079.1.S1_at	AI960349	-	-	4e+0	At5g20590	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
222.8	100.0	GSM209573	mock_0hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
181.1	100.0	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
173.4	100.0	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
158.6	100.0	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
151.2	100.0	GSM209597	susceptible_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
150.1	100.0	GSM209590	susceptible_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
146.3	100.0	GSM209587	resistant_24hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
143.4	100.0	GSM209596	resistant_24hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
124.0	100.0	GSM209582	mock_0hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
114.7	100.0	GSM209580	resistant_48hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.72	0	3352	Gma.8416.1.S1_at	U13987.1	Inducible nitrate reductase 2 (INR2)	-	1e-10	At1g77760	NIA1 (NITRATE REDUCTASE 1)	C.G.	S.X.	Please select
0.29	8e-74	280	Gma.34.1.S1_at	AW781509	nitrate reductase	-	5e-7	At1g37130	NIA2 (NITRATE REDUCTASE 2)	C.G.	S.X.	Please select
0.15	3e-36	155	GmaAffx.63680.1.S1_at	AW781391	-	-	8e-2	At1g77760	NIA1 (NITRATE REDUCTASE 1)	C.G.	S.X.	Please select
0.01	2e-3	46	PsAffx.C37000041_at	PsAffx.C37000041	-	-	3e-1	At1g13760	unknown protein	C.G.	S.X.	Please select
0.01	5e-1	38	GmaAffx.73473.1.S1_at	BM086203	-	-	5e-33	At3g06820	mov34 family protein	C.G.	S.X.	Please select
0.01	5e-1	38	Gma.14168.1.S1_at	BI892734	-	-	8e-1	At5g16050	GRF5 (GENERAL REGULATORY FACTOR 5)	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.CL591Contig1_at	PsAffx.CL591Contig1	-	-	4e+0	At1g29590	eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative	C.G.	S.X.	Please select
0.01	2e+0	36	PsAffx.C198000013_at	PsAffx.C198000013	-	-	5e-1	At1g56060	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	36	GmaAffx.86464.2.S1_at	AW831641	-	-	2e-2	At5g50570	squamosa promoter-binding protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.20	4e-10	67	Arabidopsis thaliana	At1g77760	844112	NIA1 (NITRATE REDUCTASE 1)	Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation, it contributes about 15% of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases at the N-terminus, and to FAD/NAD-binding cytochrome reductases at the C-terminus. Cofactors: FAD, heme iron (cytochrome B-557), and molybdenum-pterin.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.21	4e-24	113	Hordeum vulgare	Contig13776_at	Contig13776	-	-	4e-10	At1g77760	NIA1 (NITRATE REDUCTASE 1)	C.G.	S.X.	Please select
0.23	4e-33	145	Oryza sativa	Os02g0770800	AK102178.1	-	Nitrate reductase [NAD(P)H] (EC 1.7.1.2)	5e-16	At1g77760	NIA1 (NITRATE REDUCTASE 1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	3e-8	61	Populus trichocarpa	Ptp.5930.1.S1_s_at	BU816698	hypothetical protein	-	6e-4	At1g37130	NIA2 (NITRATE REDUCTASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	7e-15	83	Triticum aestivum	Ta.5633.1.S1_a_at	BG904383	-	-	3e-4	At1g37130	NIA2 (NITRATE REDUCTASE 2)	C.G.	S.X.	Please select
0.16	4e-29	129	Vitis vinifera	1615159_s_at	CD711821	similar to nitrate reductase	-	3e-26	At1g37130	NIA2 (NITRATE REDUCTASE 2)	C.G.	S.X.	Please select
0.23	1e-26	121	Zea mays	Zm.1826.1.A1_at	AW461127	nitrate reductase	-	8e-21	At1g37130	NIA2 (NITRATE REDUCTASE 2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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