Gene omics information

Query gene ID	Gma.12076.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	82.9	Gma.12076.1.S1_at	CD410539	-	-	1e-45	At4g31860	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.67	86.1	Gma.13320.1.S1_at	BE802768	-	-	4e-7	At5g64180	unknown protein	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.32084.1.S1_at	BE823130	-	-	1e-26	At4g25970	PSD3 (phosphatidylserine decarboxylase 3)	S.X.	H.G.	Please select
0.57	78.8	Gma.5056.1.S1_at	BI970673	-	-	1e-2	At3g22170	FHY3 (FAR-RED ELONGATED HYPOCOTYLS 3)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.661.1.S1_at	BI969786	-	-	2e+0	At1g67080	ABA4 (abscisic acid (ABA)-deficient 4)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.22333.1.S1_at	BI784750	-	-	1e-3	At3g12940	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.7	98.4	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.5	97.7	GSM292596	26_C146.1I.V7I1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.4	97.6	GSM292258	78_C034.1B.R9B3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM292589	19_C160.1I.V7I3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM292211	74-C018.1A.R9A3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM294114	6_3114.2G.SLG1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM292393	69_C106.1F.SLF3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	1e-64	248	Gma.5188.1.S1_at	AW349454	-	-	4e-18	At4g31860	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.44	1e-64	248	Gma.5188.1.S1_a_at	AW349454	-	-	4e-18	At4g31860	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.27	4e-62	240	GmaAffx.58382.1.A1_at	BE660717	-	-	1e-33	At4g31860	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.27	4e-62	240	GmaAffx.58382.1.S1_at	BE660717	-	-	1e-33	At4g31860	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.25	1e-61	238	GmaAffx.32369.1.S1_at	BI972070	-	-	2e-4	At2g25070	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.02	4e-3	44	GmaAffx.70426.1.S1_at	CA938810	-	-	3e-1	At5g58590	RANBP1 (RAN BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.01	3e-1	38	PsAffx.C94000017_at	PsAffx.C94000017	-	-	3e-1	At2g39805	integral membrane Yip1 family protein	C.G.	S.X.	Please select
0.01	3e-1	38	Gma.8038.1.S1_x_at	BE821300	-	-	1e-8	At1g72770	HAB1 (HOMOLOGY TO ABI1)	C.G.	S.X.	Please select
0.01	3e-1	38	Gma.6338.1.S1_at	AI442775	-	-	8e-10	At4g38520	protein phosphatase 2C family protein / PP2C family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.43	1e-45	184	Arabidopsis thaliana	At4g31860	829315	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOFBVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.30	7e-18	91	Hordeum vulgare	Contig20314_at	Contig20314	-	-	1e-14	At4g31860	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.30	2e-49	198	Oryza sativa	Os06g0651600	AK112023.1	-	Protein phosphatase type-2C	6e-8	At4g31860	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.50	4e-142	506	Populus trichocarpa	PtpAffx.142827.1.S1_a_at	CV276199	hypothetical protein	-	2e-50	At4g31860	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.31	3e-25	117	Triticum aestivum	Ta.7203.1.S1_a_at	BJ264095	-	-	6e-11	At4g31860	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.55	0	650	Vitis vinifera	1622681_at	CD800306	hypothetical protein LOC100261065	-	2e-50	At2g25070	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.28	9e-14	77	Zea mays	Zm.579.1.S1_at	AF213455.1	Protein phosphatase type-2C	-	1e-5	At2g25070	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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