Gene omics information

Query gene ID	Gma.11922.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.84	92.6	Gma.11922.1.S1_at	AW394565	-	-	3e+0	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	S.X.	H.G.	Please select
0.50	71.7	Gma.1630.1.S1_x_at	BF596536	-	-	4e-122	At1g70490	ARFA1D	S.X.	H.G.	Please select
0.48	67.7	GmaAffx.18174.1.S1_at	BU545155	-	-	4e-38	At1g11020	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.46	65.5	Gma.3757.2.S1_a_at	AI941326	-	-	8e-35	At3g46460	UBC13 (ubiquitin-conjugating enzyme 13)	S.X.	H.G.	Please select
0.44	63.3	Gma.7065.1.S1_at	BQ297832	-	-	1e-7	At1g54080	oligouridylate-binding protein, putative	S.X.	H.G.	Please select
0.42	59.3	Gma.8323.1.S1_at	BU548446	-	-	1e-26	At5g19680	leucine-rich repeat family protein	S.X.	H.G.	Please select
0.40	57.1	Gma.1916.1.S1_at	AW185983	-	-	1e-35	At3g47810	MAG1 (MAIGO 1)	S.X.	H.G.	Please select
0.40	57.1	Gma.4155.1.S1_at	CD394281	EREBP/AP2 transcription factor	-	2e-26	At1g53910	RAP2.12	S.X.	H.G.	Please select
0.39	54.5	Gma.15387.1.S1_s_at	CD399274	-	-	8e-55	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.35	48.6	Gma.5720.1.S1_s_at	AW348669	-	-	4e-5	At1g51200	zinc finger (AN1-like) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	98.0	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0	95.6	GSM293377	62_1573.1Q.R160L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.9	95.4	GSM293419	10_C108.1R.R9R3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.8	95.1	GSM293313	94_1237.1P.R145U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7	94.8	GSM293367	53_1551.1Q.R100U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM294206	58_2338.2H.R240P_new, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM293431	21_C094.1R.SLR1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6	94.5	GSM294219	6_2368.2H.R229P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM294197	4_3138.2H.R9H2P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.5	94.2	GSM294276	2_2423.2I.R267U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.27	1e-129	464	GmaAffx.64048.1.S1_s_at	BF070357	-	-	2e-12	At1g34220	unknown protein	C.G.	S.X.	Please select
0.12	2e-7	57	GmaAffx.60756.1.A1_at	BU544831	-	-	4e+0	At5g38110	ASF1B (ANTI- SILENCING FUNCTION 1B)	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.CL127Contig1_at	PsAffx.CL127Contig1	-	-	3e-1	At1g34245	-	C.G.	S.X.	Please select
0.02	2e-1	38	PsAffx.CL1302Contig1_s_at	PsAffx.CL1302Contig1	-	-	2e+1	At5g19480	unknown protein	C.G.	S.X.	Please select
0.01	2e-1	38	PsAffx.C85000014_at	PsAffx.C85000014	-	-	2e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	C.G.	S.X.	Please select
0.01	2e-1	38	PsAffx.C53000040_at	PsAffx.C53000040	-	-	3e+0	At1g48140	dolichol-phosphate mannosyltransferase-related	C.G.	S.X.	Please select
0.02	2e-1	38	GmaAffx.8607.1.S1_at	AW156502	-	-	1e-26	At1g66670	CLPP3	C.G.	S.X.	Please select
0.01	9e-1	36	PsAffx.C30000088_at	PsAffx.C30000088	-	-	1e+0	At3g14510	geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative	C.G.	S.X.	Please select
0.01	9e-1	36	PsAffx.C226000007_at	PsAffx.C226000007	-	-	3e-1	At2g43140	DNA binding / transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e+0	34	Arabidopsis thaliana	At1g28200	839714	FIP1 (FH INTERACTING PROTEIN 1)	VirF-interacting protein FIP1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	34	Hordeum vulgare	EBma03_SQ002_M07_at	EBma03_SQ002_M07	-	-	8e+0	At3g28680	prolylcarboxypeptidase-related	C.G.	S.X.	Please select
0.02	5e+0	34	Oryza sativa	OsAffx.9909.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.11	6e-8	59	Populus trichocarpa	PtpAffx.55278.1.S1_at	BP934007	-	-	3e-3	At1g34220	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e+0	34	Triticum aestivum	Ta.5948.2.A1_at	CA734991	-	-	2e+0	At5g65250	unknown protein	C.G.	S.X.	Please select
0.02	7e-1	34	Vitis vinifera	1617225_at	BQ798495	hypothetical protein LOC100245147	-	3e-1	At2g18870	VEL3 (VERNALIZATION5/VIN3-LIKE)	C.G.	S.X.	Please select
0.02	4e+0	32	Zea mays	Zm.9114.1.A1_at	BM335298	-	-	1e+0	At2g47110	UBQ6	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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