CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.1174.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 Gma.1174.1.S1_at CD397033 - - 2e-13 At1g62250 unknown protein S.X. H.G.
0.63 82.9 Gma.1943.1.S1_s_at AF349572.1 SHOOT1 protein - 1e-14 At1g55480 binding / protein binding S.X. H.G.
0.53 74.2 Gma.3488.1.S1_at BQ628825 - - 4e+0 At3g27050 unknown protein S.X. H.G.
0.50 71.7 Gma.11910.1.S1_at BF598192 - - 2e-4 At5g07020 proline-rich family protein S.X. H.G.
0.48 67.7 Gma.3532.1.S1_at BI942391 - - 1e-22 At2g46100 unknown protein S.X. H.G.
0.48 67.7 GmaAffx.1647.2.A1_s_at CD395936 - - 2e-1 At4g12830 hydrolase, alpha/beta fold family protein S.X. H.G.
0.44 63.3 Gma.12847.2.A1_at CD405101 - - 7e-1 At4g10310 HKT1 (HIGH-AFFINITY K+ TRANSPORTER 1) S.X. H.G.
0.38 53.3 Gma.17766.1.S1_at CD399397 - - 1e-32 At5g16400 ATF2 S.X. H.G.
0.32 43.7 Gma.4553.1.A1_at BU081133 - - 1e-48 At1g52510 hydrolase, alpha/beta fold family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
238.1 100.0 GSM238057 Soybean-S03W4-1-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
208.7 100.0 GSM209581 susceptible_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
143.2 100.0 GSM209580 resistant_48hours_rep1 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
128.9 100.0 GSM209599 susceptible_48hours_rep3 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
126.8 100.0 GSM209590 susceptible_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
120.6 100.0 GSM238030 Soybean-2601R-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
102.5 100.0 GSM238059 Soybean-S03W4-3-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
94.2 100.0 GSM209589 resistant_48hours_rep2 GSE8432 Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
82.2 100.0 GSM238058 Soybean-S03W4-2-RMA GSE9374 Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
78.2 100.0 GSM245936 Leaf_LCO treated_Rep 1_48 h After Treatment GSE9730 Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 5e-2 40 GmaAffx.81897.1.S1_at BG654280 - - 3e-16 At3g02110 scpl25 (serine carboxypeptidase-like 25) C.G. S.X.
0.02 5e-2 40 GmaAffx.78995.1.S1_at BI316785 inositol phosphate kinase - 2e+0 At5g10680 calmodulin-binding protein-related C.G. S.X.
0.03 5e-2 40 GmaAffx.77227.1.S1_at AW100539 - - 7e-20 At5g53430 SDG29 (SET DOMAIN GROUP 29) C.G. S.X.
0.02 5e-2 40 GmaAffx.36627.1.S1_at BE660364 - - 5e-34 At3g25230 ROF1 (ROTAMASE FKBP 1) C.G. S.X.
0.01 2e-1 38 PsAffx.C294000007_at PsAffx.C294000007 - - 1e-1 At5g66040 STR16 (SULFURTRANSFERASE PROTEIN 16) C.G. S.X.
0.02 2e-1 38 GmaAffx.83946.1.S1_at BE023509 - - 1e+0 At2g34925 CLE42 (CLAVATA3/ESR-RELATED 42) C.G. S.X.
0.02 2e-1 38 GmaAffx.77686.1.S1_at BM307919 - - 2e+0 At5g52760 heavy-metal-associated domain-containing protein C.G. S.X.
0.03 2e-1 38 GmaAffx.5276.1.S1_at BM522939 - - 5e-1 At4g21010 transcription initiation factor-related C.G. S.X.
0.02 2e-1 38 GmaAffx.44813.1.A1_at BE611850 - - 3e-8 At5g63940 protein kinase family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.31 2e-13 77 Arabidopsis thaliana At1g62250 842522 unknown protein F:unknown;P:unknown;C:chloroplast;P - - - C.G. S.X.
0.03 7e-2 38 Hordeum vulgare HVSMEh0094M14f_s_at HVSMEh0094M14f - - 2e-1 At4g21215 unknown protein C.G. S.X.
0.14 3e-1 38 Oryza sativa Os03g0744700 AK071178.1 - Conserved hypothetical protein 4e-2 At1g62250 unknown protein C.G. S.X.
0.24 2e-19 97 Populus trichocarpa PtpAffx.99814.1.A1_at CV271088 hypothetical protein - 3e-2 At1g62250 unknown protein C.G. S.X.
0.07 6e-7 56 Triticum aestivum Ta.15463.1.S1_at CA484879 - - 2e+0 At2g11651 unknown protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1608068_at BQ793085 hypothetical protein LOC100253134 - 3e-1 At5g51740 peptidase M48 family protein C.G. S.X.
0.02 4e-3 42 Zea mays Zm.18004.1.A1_at CK827965 dihydroflavonol-4-reductase - 1e-1 At4g08800 protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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