CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.1144.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.42 59.3 Gma.1144.1.S1_at CD405843 - - 5e-38 At3g48890 ATMP2 S.X. H.G.
0.43 60.6 Gma.9531.1.S1_at CA820670 - - 2e-15 At1g48420 D-CDES (D-CYSTEINE DESULFHYDRASE) S.X. H.G.
0.30 40.4 Gma.9531.2.S1_at BG316396 - - 1e+0 At3g47340 ASN1 (GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1) S.X. H.G.
0.27 35.7 Gma.7298.1.S1_s_at BG156412 - - 1e-7 At3g29575 AFP3 (ABI FIVE BINDING PROTEIN 3) S.X. H.G.
0.27 35.7 Gma.11260.1.S1_at AI759626 - - 2e-16 At3g12290 tetrahydrofolate dehydrogenase/cyclohydrolase, putative S.X. H.G.
0.14 17.5 Gma.1425.2.S1_a_at BF070610 - - 3e-7 At5g06770 KH domain-containing protein / zinc finger (CCCH type) family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.6 96.7 GSM292924 96_C206.1L.SLL2P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5 96.6 GSM294061 19_2292.2G.R251P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5 96.6 GSM292173 29-C006.1A.SLA1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM293335 24_1568.1Q.R156P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM294562 33_2547.2L.R134U, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3 96.2 GSM294661 33_3230.2M.SLM3P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM292863 40_C207.1L.V7L2L, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM293358 45_1548.1Q.R070P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM292926 98_C204.1L.SLL1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.0 95.6 GSM293000 75_C234.1M.SLM3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 2097 Gma.1144.1.S1_a_at CD405843 - - 5e-38 At3g48890 ATMP2 C.G. S.X.
0.80 0 1035 Gma.1144.2.S1_at BE821744 - - 3e-42 At3g48890 ATMP2 C.G. S.X.
0.41 3e-117 422 Gma.2849.2.S1_a_at BF009344 - - 1e-32 At3g48890 ATMP2 C.G. S.X.
0.41 3e-117 422 Gma.2849.2.S1_at BF009344 - - 1e-32 At3g48890 ATMP2 C.G. S.X.
0.39 6e-97 355 GmaAffx.90559.1.S1_x_at CF806284 - - 2e-23 At3g48890 ATMP2 C.G. S.X.
0.39 6e-97 355 GmaAffx.90559.1.S1_s_at CF806284 - - 2e-23 At3g48890 ATMP2 C.G. S.X.
0.39 6e-97 355 GmaAffx.90559.1.S1_at CF806284 - - 2e-23 At3g48890 ATMP2 C.G. S.X.
0.16 6e-23 109 Gma.2849.1.S1_at CD418012 - - 1e-3 At5g52240 MSBP1 (membrane steroid binding protein 1) C.G. S.X.
0.03 3e-6 54 PsAffx.C173000025_at PsAffx.C173000025 - - 4e-2 At4g32551 LUG (LEUNIG) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 5e-38 159 Arabidopsis thaliana At3g48890 824050 ATMP2 putative progesterone-binding protein homolog (Atmp2) mRNA, - - - C.G. S.X.
0.19 1e-33 143 Hordeum vulgare Contig3554_at Contig3554 - - 6e-13 At3g48890 ATMP2 C.G. S.X.
0.17 4e-34 147 Oryza sativa Os10g0502600 AK069511.1 - Cytochrome b5 domain containing protein 4e-26 At3g48890 ATMP2 C.G. S.X.
0.21 2e-47 190 Populus trichocarpa Ptp.2453.1.S1_at CV284013 hypothetical protein - 2e-28 At5g52240 MSBP1 (membrane steroid binding protein 1) C.G. S.X.
0.22 2e-31 137 Triticum aestivum Ta.6101.2.S1_a_at CA697971 - - 3e-16 At3g48890 ATMP2 C.G. S.X.
0.28 8e-56 216 Vitis vinifera 1609309_at CF568890 - - 4e-43 At3g48890 ATMP2 C.G. S.X.
0.18 1e-30 133 Zea mays Zm.14411.2.S1_at AY104410.1 membrane steroid-binding protein 1 - 6e-10 At3g48890 ATMP2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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