Gene omics information

Query gene ID	Gma.1143.1.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.86	93.0	Gma.1143.1.A1_at	AW278604	-	-	4e-6	At2g16860	GCIP-interacting family protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.18603.1.S1_at	AW348781	-	-	1e+0	At5g09260	VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)	S.X.	H.G.	Please select
0.47	66.6	Gma.437.1.S1_s_at	CD401627	Profilin, PRO2	-	1e-10	At2g19760	PRF1 (PROFILIN 1)	S.X.	H.G.	Please select
0.40	57.1	Gma.4466.1.S1_at	BQ629041	-	-	2e-13	At5g48160	OBE2 (OBERON2)	S.X.	H.G.	Please select
0.38	53.3	GmaAffx.92496.1.S1_s_at	CF808221	-	-	1e-75	At1g78870	UBC35 (UBIQUITIN-CONJUGATING ENZYME 35)	S.X.	H.G.	Please select
0.36	50.8	Gma.5722.1.S1_at	BU546228	-	-	1e-14	At4g24100	protein kinase family protein	S.X.	H.G.	Please select
0.33	46.1	Gma.13106.1.S1_at	CD393221	beclin 1 protein	-	1e-60	At3g61710	autophagy protein Apg6 family	S.X.	H.G.	Please select
0.33	46.1	Gma.15387.2.S1_at	AW101379	-	-	2e-52	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	S.X.	H.G.	Please select
0.32	43.7	Gma.10823.2.S1_at	BM307619	-	-	2e-82	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	S.X.	H.G.	Please select
0.30	40.4	Gma.16949.1.S1_at	BI945119	-	-	1e-4	At1g01650	aspartic-type endopeptidase/ peptidase	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	98.0	GSM294430	85_2455.2J.R220U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM191087	Soybean_Cotyledon_II1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.6	96.7	GSM292165	2-1008.1A.R004P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM294399	57_2433.2J.R090L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292448	49_C110.1G.V7G1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM171679	29_W.A.I.3, Experimental replicate W	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.4	96.4	GSM293593	24_2082.2B.R035P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2	96.0	GSM244834	23_CON.M2W4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.2	96.0	GSM191078	Soybean_Cotyledon_SUS2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
3.1	95.8	GSM147954	Laser capture microdissected (LCM) outer integument at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	6e-92	337	GmaAffx.52867.1.A1_at	AW310514	-	-	3e-15	At2g16860	GCIP-interacting family protein	C.G.	S.X.	Please select
0.23	2e-55	216	Gma.1143.2.S1_at	BF424123	-	-	3e-4	At5g25510	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	C.G.	S.X.	Please select
0.16	1e-31	137	Gma.7938.1.A1_at	BU551211	-	-	1e+0	At1g35550	elongation factor Tu C-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	3e-1	36	GmaAffx.443.1.A1_at	AW761453	-	-	9e-2	At4g08039	-	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.4379.1.S1_at	CD393195	-	-	1e-23	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.4379.2.S1_s_at	CD413761	-	-	3e-15	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.4379.1.S1_a_at	CD393195	-	-	1e-23	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	C.G.	S.X.	Please select
0.02	1e+0	34	Gma.4379.1.S1_x_at	CD393195	-	-	1e-23	At4g11150	TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1)	C.G.	S.X.	Please select
0.02	5e+0	32	PsAffx.C41000021_at	PsAffx.C41000021	-	-	3e+0	At2g37910	cation/hydrogen exchanger, putative (CHX21)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	4e-6	52	Arabidopsis thaliana	At2g16860	816187	GCIP-interacting family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-2	38	Hordeum vulgare	Contig16424_at	Contig16424	-	-	1e-7	At5g25510	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	C.G.	S.X.	Please select
0.05	7e+0	32	Oryza sativa	OsAffx.8663.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	2e-21	103	Populus trichocarpa	PtpAffx.146199.1.A1_at	CV272864	hypothetical protein	-	2e-1	At2g16860	GCIP-interacting family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-1	36	Triticum aestivum	TaAffx.2991.2.S1_at	CA610248	-	-	4e+0	At4g15415	ATB' GAMMA	C.G.	S.X.	Please select
0.14	2e-20	97	Vitis vinifera	1611655_at	CB913871	-	-	3e-32	At2g16860	GCIP-interacting family protein	C.G.	S.X.	Please select
0.03	6e+0	30	Zea mays	Zm.2717.1.A1_at	CK347342	-	-	6e-6	At3g14350	SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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