Gene omics information

Query gene ID	Gma.11341.3.S1_s_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	81.8	Gma.11341.3.S1_s_at	BM177332	-	-	8e-26	At4g17900	zinc-binding family protein	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.92861.1.S1_s_at	CF808586	-	-	8e-2	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.24666.1.S1_at	CA783210	-	-	2e-1	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	S.X.	H.G.	Please select
0.42	59.3	GmaAffx.65140.1.S1_at	BI700031	-	-	7e-2	At4g33670	L-galactose dehydrogenase (L-GalDH)	S.X.	H.G.	Please select
0.40	57.1	Gma.17739.1.S1_at	AW310535	-	-	4e-1	At2g04220	unknown protein	S.X.	H.G.	Please select
0.33	46.1	PsAffx.psHA006iH10r_s_at	PsAffx.psHA006iH10r	-	-	1e+0	At2g28140	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.7	98.7	GSM293639	66_2084.2B.R288P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.3	98.2	GSM293836	76_2176.2D.R217P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM294145	10_3144.2H.V7H3P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.1	98.1	GSM293593	24_2082.2B.R035P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM292938	19_1524.1M.R315P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM293956	13_2286.2F.R031P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293856	9_3060.2D.V7D1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293464	51_C098.1R.V7R2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM293051	53_C022.1N.SLN1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292653	7_C156.1I.V7I2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.40	0	638	Gma.11341.1.S1_at	BG652352	-	-	2e-7	At1g32700	zinc-binding family protein	C.G.	S.X.	Please select
0.71	1e-157	555	Gma.11341.2.S1_at	BQ081111	-	-	5e-21	At4g17900	zinc-binding family protein	C.G.	S.X.	Please select
0.46	2e-82	305	GmaAffx.91067.1.S1_s_at	CF806445	-	-	3e-20	At1g32700	zinc-binding family protein	C.G.	S.X.	Please select
0.29	2e-82	305	Gma.3758.2.S1_x_at	BM524173	-	-	5e-20	At1g32700	zinc-binding family protein	C.G.	S.X.	Please select
0.29	2e-82	305	Gma.3758.2.S1_at	BM524173	-	-	5e-20	At1g32700	zinc-binding family protein	C.G.	S.X.	Please select
0.21	4e-13	75	Gma.17798.1.S1_at	BU084728	-	-	6e-22	At1g32700	zinc-binding family protein	C.G.	S.X.	Please select
0.04	8e-2	38	GmaAffx.83788.2.S1_at	BM309503	-	-	2e-5	At5g49820	emb1879 (embryo defective 1879)	C.G.	S.X.	Please select
0.03	3e-1	36	GmaAffx.28995.1.A1_at	BU548255	-	-	4e-23	At5g05080	UBC22 (ubiquitin-conjugating enzyme 22)	C.G.	S.X.	Please select
0.04	3e-1	36	GmaAffx.25010.1.S1_at	AW101688	-	-	2e-1	At1g48100	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.31	8e-26	117	Arabidopsis thaliana	At4g17900	827514	zinc-binding family protein	F:binding;P:biological_process unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	7e-3	40	Hordeum vulgare	Contig4250_s_at	Contig4250	-	-	2e-1	At1g76590	zinc-binding family protein	C.G.	S.X.	Please select
0.13	1e-10	67	Oryza sativa	Os02g0692700	AK066953.1	-	Protein of unknown function DUF597 family protein	4e-2	At4g17900	zinc-binding family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	1e-28	127	Populus trichocarpa	PtpAffx.891.10.S1_at	BU896278	hypothetical protein	-	4e-7	At1g32700	zinc-binding family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.20	2e-8	59	Triticum aestivum	Ta.6371.3.S1_a_at	CA655332	-	-	3e-1	At1g76590	zinc-binding family protein	C.G.	S.X.	Please select
0.28	3e-81	299	Vitis vinifera	1619241_at	BQ793371	hypothetical protein LOC100250554	-	3e-37	At4g17900	zinc-binding family protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.10461.1.S1_at	CA826724	-	-	3e+0	At2g25605	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage