Gene omics information

Query gene ID	Gma.11254.1.S1_x_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.3	Gma.11254.1.S1_x_at	CD391589	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	S.X.	H.G.	Please select
0.80	91.5	GmaAffx.39605.1.S1_at	BM178864	-	-	2e+0	At2g41470	unknown protein	S.X.	H.G.	Please select
0.67	86.1	Gma.11254.1.S1_a_at	CD391589	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	S.X.	H.G.	Please select
0.60	80.7	Gma.11367.1.S1_at	AW598213	-	-	8e-3	At5g16840	BPA1 (BINDINGPARTNEROFACD11 1)	S.X.	H.G.	Please select
0.50	71.7	GmaAffx.1301.88.S1_s_at	BG041563	-	-	4e-12	At5g15600	SP1L4 (SPIRAL1-LIKE4)	S.X.	H.G.	Please select
0.50	71.7	Gma.11254.3.S1_a_at	BF069978	-	-	4e+0	At4g13790	auxin-responsive protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.8	99.1	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.8	99.1	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.7	99.1	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
8.0	99.0	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.5	98.9	GSM238031	Soybean-2601R-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.4	98.9	GSM238055	Soybean-PS46R-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.4	98.9	GSM238033	Soybean-2601R-5-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
7.4	98.9	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.9	98.8	GSM238052	Soybean-PS46R-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
6.6	98.7	GSM191088	Soybean_Cotyledon_II2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	1334	Gma.11254.1.S1_a_at	CD391589	-	-	9e+0	At5g45040	cytochrome c6 (ATC6)	C.G.	S.X.	Please select
0.60	0	898	Gma.11254.2.S1_at	CD401279	-	-	6e+0	At4g13790	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.20	9e-84	311	Gma.11254.3.S1_a_at	BF069978	-	-	4e+0	At4g13790	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.20	9e-84	311	Gma.11254.3.S1_x_at	BF069978	-	-	4e+0	At4g13790	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.02	8e-4	46	Gma.2961.1.S1_at	CD415704	-	-	2e-4	At1g22360	AtUGT85A2 (UDP-glucosyl transferase 85A2)	C.G.	S.X.	Please select
0.02	3e-3	44	GmaAffx.76093.1.S1_at	BG045222	-	-	9e-2	At4g00100	ATRPS13A (ARABIDOPSIS THALIANA RIBOSOMAL PROTEIN S13A)	C.G.	S.X.	Please select
0.01	8e-1	36	PsAffx.C148000012_at	PsAffx.C148000012	-	-	6e+0	At4g19350	EMB3006 (embryo defective 3006)	C.G.	S.X.	Please select
0.02	8e-1	36	GmaAffx.73824.1.S1_at	BM526974	-	-	1e+0	At4g14750	IQD19 (IQ-domain 19)	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C81000069_at	PsAffx.C81000069	-	-	2e+0	At3g48960	60S ribosomal protein L13 (RPL13C)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	9e+0	32	Arabidopsis thaliana	At5g45040	834535	cytochrome c6 (ATC6)	F:electron carrier activity, iron ion binding, heme binding;P:unknown;C:unknown;BOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	4e+0	32	Hordeum vulgare	HV06A23u_x_at	HV06A23u	-	-	1e+1	At5g54980	integral membrane family protein	C.G.	S.X.	Please select
0.01	5e-3	44	Oryza sativa	Os.56707.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e-5	50	Populus trichocarpa	Ptp.6581.1.S1_s_at	CV260686	hypothetical protein	-	3e-2	At4g08685	SAH7	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	34	Triticum aestivum	TaAffx.113231.1.S1_at	CA617071	-	-	4e+0	At5g25940	early nodulin-related	C.G.	S.X.	Please select
0.06	3e-12	71	Vitis vinifera	1608493_at	CF516947	similar to F28K19.26	-	4e-1	At1g29140	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.02	1e+0	34	Zea mays	Zm.5401.1.S1_at	AI065471	pollen-specific protein C13	-	5e-1	At4g17500	ATERF-1 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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