Gene omics information

Query gene ID Gma.11238.1.S1_a_at
Gene name
Organism Glycine max


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9198.6Gma.11238.1.S1_a_atBQ454110--3e-121At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)S.X.H.G.
0.7388.9Gma.11238.1.S1_atBQ454110--3e-121At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)S.X.H.G.
0.6786.1Gma.10455.1.S1_s_atBQ628953--3e-8At4g34350HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)S.X.H.G.
0.6786.1GmaAffx.77778.1.S1_atAW185540--5e+0At5g52480-S.X.H.G.
0.5071.7Gma.10455.1.S1_atBQ628953--3e-8At4g34350HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)S.X.H.G.
0.4360.6Gma.4927.1.S1_atBG510284--7e-3At4g15236ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide bindingS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
6.598.7GSM29322615_C065.1P.R9P2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.398.6GSM29291285_1467.1L.R284L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.898.4GSM29432372_3157.2I.V7I3L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.598.3GSM29227419_C089.1E.R9E3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.598.3GSM29427226_2427.2I.R297L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.398.2GSM29354358_2017.2A.R245L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.398.2GSM29290276_C215.1L.R9L3L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.398.2GSM29380245_3067.2D.R9D3L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.398.2GSM29423887_2337.2H.R240L, Experimental replicate 2GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.298.1GSM2930252_C027.1N.V7N2L, Experimental replicate 1GSE11611Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.9804040Gma.11238.1.S1_atBQ454110--3e-121At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)C.G.S.X.
0.3701005GmaAffx.90026.1.S1_s_atCF805751--5e-18At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)C.G.S.X.
0.014e-138HgAffx.23406.1.S1_atBF014443--4e-10At5g20570RBX1 (RING-BOX 1)C.G.S.X.
0.014e-138GmaAffx.26030.1.A1_atBU545898--1e+0At5g50740metal ion bindingC.G.S.X.
0.034e-138Gma.13479.1.A1_atCD399580--9e-2At5g63410leucine-rich repeat transmembrane protein kinase, putativeC.G.S.X.
0.012e+036GmaAffx.72258.1.S1_atBF067925--1e-15At4g21750ATML1 (MERISTEM LAYER 1)C.G.S.X.
0.012e+036Gma.389.1.A1_atAW349686--3e+0At5g14920gibberellin-regulated family proteinC.G.S.X.
0.012e+036Gma.3938.1.S1_atBF595377--4e-11At5g09680cytochrome b5 domain-containing proteinC.G.S.X.
0.006e+034PsAffx.C7000008_atPsAffx.C7000008--8e-1At2g42870PAR1 (PHY RAPIDLY REGULATED 1)C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.463e-121436Arabidopsis thalianaAt5g60600836181HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP+ reductase.---C.G.S.X.
0.332e-71270Hordeum vulgareContig3822_atContig3822--6e-43At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)C.G.S.X.
0.409e-111402Oryza sativaOs02g0603800AK120769.1-Isoprenoid biosynthesis-like protein (Fragment)6e-86At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)C.G.S.X.
0.451e-152541Populus trichocarpaPtp.2213.1.S1_atCV262432hypothetical protein-5e-45At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)C.G.S.X.
0.166e-1893Triticum aestivumTa.10120.1.S1_atBJ224992--6e-14At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)C.G.S.X.
0.288e-107387Vitis vinifera1613715_atCF211315hypothetical protein LOC100257071-9e-21At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)C.G.S.X.
0.411e-109397Zea maysZm.10841.1.A1_atBQ619556hydroxymethylbutenyl 4-diphosphate synthase-2e-64At5g60600HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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