Gene omics information

Query gene ID	Gma.11220.2.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.11220.2.S1_a_at	CF920389	-	-	2e-19	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	S.X.	H.G.	Please select
0.50	71.7	Gma.7492.1.S1_at	AW597705	-	-	1e-45	At3g22200	POP2 (POLLEN-PISTIL INCOMPATIBILITY 2)	S.X.	H.G.	Please select
0.44	63.3	GmaAffx.93071.1.S1_s_at	CF808796	-	-	2e-52	At5g13420	transaldolase, putative	S.X.	H.G.	Please select
0.38	53.3	GmaAffx.1252.1.S1_at	CD416461	-	-	4e-7	At1g50740	unknown protein	S.X.	H.G.	Please select
0.29	39.0	GmaAffx.92978.1.S1_s_at	CF808703	-	-	5e-9	At2g41790	peptidase M16 family protein / insulinase family protein	S.X.	H.G.	Please select
0.11	14.2	Gma.6351.1.S1_at	AW349648	-	-	4e-74	At4g26910	2-oxoacid dehydrogenase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.5	97.7	GSM293595	26_2077.2B.R246U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.2	97.4	GSM293603	33_2059.2B.R199L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM171716	7_Y.I.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.8	97.0	GSM171608	12_Y.E.I.3, Experimental replicate Y	GSE7124	Plant and pathogen gene expression during infection by P.sojae of 8 soybean cultivars varying in quantitative resistance
3.8	97.0	GSM293617	46_3031.2B.R9B3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM292912	85_1467.1L.R284L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM244822	20_CON.I3L1.CEL, Experimental replicate 1	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.6	96.7	GSM293600	30_2081.2B.R035L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM294040	8_2273.2F.R139L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292391	67_1229.1F.R141L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.38	4e-55	216	Gma.4909.1.A1_at	BI969733	-	-	3e+0	At2g30730	serine/threonine protein kinase, putative	C.G.	S.X.	Please select
0.01	8e-1	36	PsAffx.C93000015_at	PsAffx.C93000015	-	-	8e-2	At2g25620	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.01	8e-1	36	Gma.13192.1.S1_at	CD392405	-	-	2e-23	At3g54690	sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein	C.G.	S.X.	Please select
0.01	3e+0	34	PsAffx.C57000055_at	PsAffx.C57000055	-	-	3e-1	At1g07420	SMO2-1 (STEROL 4-ALPHA-METHYL-OXIDASE 2-1)	C.G.	S.X.	Please select
0.02	3e+0	34	PsAffx.C228000005_at	PsAffx.C228000005	-	-	6e-1	At1g07430	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.66140.1.S1_at	BF423984	-	-	2e-12	At3g10230	LYC (LYCOPENE CYCLASE)	C.G.	S.X.	Please select
0.02	3e+0	34	GmaAffx.43579.1.S1_at	AW132179	-	-	3e+0	At3g06280	-	C.G.	S.X.	Please select
0.02	3e+0	34	Gma.17311.1.A1_s_at	BG835826	-	-	5e-9	At3g07630	ADT2 (arogenate dehydratase 2)	C.G.	S.X.	Please select
0.02	3e+0	34	Gma.1463.1.S1_at	CD409674	-	-	1e-35	At5g55230	ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	2e-19	97	Arabidopsis thaliana	At4g29010	829022	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	8e-8	57	Hordeum vulgare	Contig3523_at	Contig3523	-	-	4e-13	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	C.G.	S.X.	Please select
0.03	2e-5	52	Oryza sativa	Os02g0274100	AF442962.1	-	3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8)	2e-9	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.34	8e-35	149	Populus trichocarpa	Ptp.3421.2.S1_s_at	CF119199	hypothetical protein	-	8e-23	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-3	44	Triticum aestivum	Ta.9184.1.S1_at	BJ251582	-	-	2e-8	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	C.G.	S.X.	Please select
0.25	5e-54	210	Vitis vinifera	1615747_at	BQ797735	hypothetical protein LOC100245687	-	6e-18	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	C.G.	S.X.	Please select
0.08	7e-11	67	Zea mays	Zm.1442.1.A1_at	BM080134	peroxisomal fatty acid beta-oxidation multifunctional protein	-	2e-18	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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