Gene omics information

Query gene ID	Gma.11154.1.S1_a_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.96	99.6	Gma.11154.1.S1_a_at	AW309927	-	-	4e-7	At1g63220	C2 domain-containing protein	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.90332.1.S1_at	CF806057	-	-	2e-1	At5g25880	ATNADP-ME3 (NADP-malic enzyme 3)	S.X.	H.G.	Please select
0.35	48.6	Gma.12531.1.S1_at	BG508441	-	-	4e-4	At3g25420	scpl21 (serine carboxypeptidase-like 21)	S.X.	H.G.	Please select
0.34	47.2	GmaAffx.86175.1.S1_at	AW349132	-	-	1e+0	At1g51410	cinnamyl-alcohol dehydrogenase, putative (CAD)	S.X.	H.G.	Please select
0.33	46.1	Gma.4271.1.S1_at	BI970177	-	-	4e-1	At5g28050	cytidine/deoxycytidylate deaminase family protein	S.X.	H.G.	Please select
0.26	33.9	GmaAffx.93071.1.S1_s_at	CF808796	-	-	2e-52	At5g13420	transaldolase, putative	S.X.	H.G.	Please select
0.26	33.9	Gma.3655.1.S1_at	BI469601	-	-	2e-9	At4g02860	catalytic	S.X.	H.G.	Please select
0.25	32.6	GmaAffx.22584.1.S1_at	BG652004	-	-	1e-3	At4g03160	-	S.X.	H.G.	Please select
0.24	30.9	Gma.11126.1.S1_at	AI960156	-	-	5e-30	At5g11670	ATNADP-ME2 (NADP-malic enzyme 2)	S.X.	H.G.	Please select
0.23	29.9	Gma.7611.2.S1_a_at	CA935779	-	-	4e-19	At2g38710	AMMECR1 family	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.4	97.6	GSM294043	92_3107.2F.SLF3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.4	97.6	GSM293846	85_3071.2D.SLD3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM244801	15_V71.I3U4.CEL, Experimental replicate 4	GSE9687	Expression patterns in time and space during P.sojae infection of soybean cultivars differing in quantitative resistance
3.8	97.0	GSM293850	89_3061.2D.SLD2U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.6	96.7	GSM293828	69_3071.2D.SLD3L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM292923	95_1465.1L.R283L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5	96.6	GSM293805	48_2177.2D.R141U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM292872	49_1469.1L.R285U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4	96.4	GSM293997	50_3107.2F.SLF3U, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.3	96.2	GSM292888	63_C207.1L.V7L2U, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	1582	Gma.11154.1.S1_s_at	AW309927	-	-	4e-7	At1g63220	C2 domain-containing protein	C.G.	S.X.	Please select
0.86	0	946	Gma.11154.2.S1_at	BU547879	-	-	1e-4	At1g63220	C2 domain-containing protein	C.G.	S.X.	Please select
0.10	4e-51	202	Gma.11154.4.S1_at	BQ786176	gamma-tocopherol methyltransferase	-	1e-11	At1g64970	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C89000059_at	PsAffx.C89000059	-	-	2e-1	At4g21230	protein kinase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C16000078_at	PsAffx.C16000078	-	-	4e-2	At1g30040	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	C.G.	S.X.	Please select
0.02	2e+0	34	PsAffx.C154000012_at	PsAffx.C154000012	-	-	6e-1	At2g17350	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.92779.1.S1_s_at	CF808504	-	-	7e-51	At3g63520	CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1)	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.90622.1.S1_at	CF806347	-	-	8e-5	At3g54620	BZIP25 (BASIC LEUCINE ZIPPER 25)	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.34234.1.A1_at	AI856077	-	-	3e+0	At3g23727	SCRL12 (SCR-Like 12)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	4e-7	56	Arabidopsis thaliana	At1g63220	842627	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e-1	36	Hordeum vulgare	Contig5943_s_at	Contig5943	-	-	3e-1	At2g20725	CAAX amino terminal protease family protein	C.G.	S.X.	Please select
0.03	8e-1	36	Oryza sativa	Os04g0682100	AK070539.1	-	C2 domain containing protein	3e-1	At4g08980	F-box family protein (FBW2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e+0	34	Populus trichocarpa	PtpAffx.216657.1.S1_at	pmrna31586	hypothetical protein	-	4e-1	At3g22630	PBD1 (20S PROTEASOME BETA SUBUNIT D1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e-1	36	Triticum aestivum	TaAffx.106576.2.A1_at	BJ220363	-	-	4e+0	At5g57750	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.07	8e-3	40	Vitis vinifera	1610504_at	CB974454	hypothetical protein LOC100258133	-	6e-9	At1g63220	C2 domain-containing protein	C.G.	S.X.	Please select
0.03	1e-2	40	Zea mays	Zm.1737.1.A1_at	AY104832.1	elicitor-responsive protein 3	-	8e+0	At4g17640	CKB2	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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