Gene omics information

Query gene ID	Gma.10860.3.A1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.10860.3.A1_at	BE210775	-	-	1e+0	At5g52220	-	S.X.	H.G.	Please select
0.61	81.8	Gma.10860.1.S1_at	AW350087	-	-	7e-26	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	S.X.	H.G.	Please select
0.60	80.7	Gma.10860.1.S1_a_at	AW350087	-	-	9e-13	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	S.X.	H.G.	Please select
0.50	71.7	Gma.11227.1.S1_a_at	CD411629	-	-	2e-47	At2g01600	epsin N-terminal homology (ENTH) domain-containing protein	S.X.	H.G.	Please select
0.40	57.1	Gma.11227.2.S1_x_at	AW310759	-	-	6e-3	At1g14910	epsin N-terminal homology (ENTH) domain-containing protein	S.X.	H.G.	Please select
0.28	39.0	Gma.12076.1.S1_at	CD410539	-	-	1e-45	At4g31860	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
8.4	99.1	GSM209591	mock_0hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
6.4	98.6	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.7	98.4	GSM209578	resistant_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.5	98.3	GSM209577	susceptible_12hours_rep1	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
5.4	98.2	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM293789	33_3058.2D.R9D1P, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.4	98.2	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
5.2	98.1	GSM292158	10_C010.1A.R9A2P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM292178	34-1006.1A.R003P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292177	33_1020.1A.R011P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.41	2e-98	359	Gma.10860.1.S1_at	AW350087	-	-	7e-26	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	C.G.	S.X.	Please select
0.41	2e-98	359	Gma.10860.1.S1_a_at	AW350087	-	-	9e-13	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	C.G.	S.X.	Please select
0.03	4e-1	36	GmaAffx.87365.1.S1_at	BM271286	-	-	4e-1	At3g02180	SP1L3 (SPIRAL 1-LIKE3)	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C4000130_at	PsAffx.C4000130	-	-	2e-3	At3g10310	ATP binding / microtubule motor	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.93379.1.S1_s_at	CF809104	-	-	2e-24	At1g49670	NQR	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.74802.2.S1_at	BM177955	-	-	3e+0	At5g58005	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.4351.1.S1_at	BE023594	-	-	2e-26	At1g49670	NQR	C.G.	S.X.	Please select
0.01	2e+0	34	Gma.3139.1.S1_s_at	AF034210.1	aspartate aminotransferase glyoxysomal isozyme AAT1 precursor	-	4e-43	At5g19550	ASP2 (ASPARTATE AMINOTRANSFERASE 2)	C.G.	S.X.	Please select
0.01	7e+0	32	PsAffx.C50000059_at	PsAffx.C50000059	-	-	1e-1	At1g11112	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	34	Arabidopsis thaliana	At5g52220	835298	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	32	Hordeum vulgare	HT09B14u_s_at	HT09B14u	-	-	3e+0	At3g55580	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	OsAffx.30305.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e-1	36	Populus trichocarpa	PtpAffx.45989.1.S1_at	CF234219	-	-	4e-4	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	32	Triticum aestivum	Ta.19008.1.S1_at	CD932058	-	-	1e-14	At2g30000	-	C.G.	S.X.	Please select
0.04	6e+0	30	Vitis vinifera	1619203_at	CF201901.1	-	-	4e+0	At5g49200	WD-40 repeat family protein / zfwd4 protein (ZFWD4)	C.G.	S.X.	Please select
0.04	8e+0	30	Zea mays	ZmAffx.506.1.A1_at	AI691930	-	-	3e-1	At5g07225	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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