Gene omics information

Query gene ID	Gma.10860.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.1	Gma.10860.1.S1_at	AW350087	-	-	7e-26	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	S.X.	H.G.	Please select
0.80	91.5	Gma.10860.1.S1_a_at	AW350087	-	-	9e-13	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	S.X.	H.G.	Please select
0.77	90.3	Gma.10860.3.A1_at	BE210775	-	-	1e+0	At5g52220	-	S.X.	H.G.	Please select
0.46	65.5	Gma.12076.1.S1_at	CD410539	-	-	1e-45	At4g31860	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.40	57.1	Gma.5237.1.S1_at	BQ298220	-	-	8e-10	At3g55960	NLI interacting factor (NIF) family protein	S.X.	H.G.	Please select
0.36	50.8	Gma.2063.1.S1_at	AB070857.2	aspartic proteinase 2	-	2e-8	At1g11910	aspartyl protease family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.6	GSM209579	susceptible_24hours_rep1 *failed QC*	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.5	97.7	GSM209594	resistant_12hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
4.3	97.5	GSM292596	26_C146.1I.V7I1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.1	97.3	GSM293126	3_C038.1O.R9O1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.0	97.2	GSM293105	20_C054.1O.R9O3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.9	97.1	GSM292258	78_C034.1B.R9B3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM292890	65_C202.1L.R9L1P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.8	97.0	GSM292512	28_1284.1H.R180P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM293060	61_C034.1N.R9N3P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.7	96.8	GSM292177	33_1020.1A.R011P, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	2966	Gma.10860.1.S1_a_at	AW350087	-	-	9e-13	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	C.G.	S.X.	Please select
0.37	6e-98	359	Gma.10860.3.A1_at	BE210775	-	-	1e+0	At5g52220	-	C.G.	S.X.	Please select
0.01	1e+0	36	GmaAffx.87365.1.S1_at	BM271286	-	-	4e-1	At3g02180	SP1L3 (SPIRAL 1-LIKE3)	C.G.	S.X.	Please select
0.01	1e+0	36	GmaAffx.85833.1.S1_at	BI787655	-	-	1e-54	At4g00740	dehydration-responsive protein-related	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C6000176_at	PsAffx.C6000176	-	-	6e+0	At2g40440	BTB/POZ domain-containing protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C4000130_at	PsAffx.C4000130	-	-	2e-3	At3g10310	ATP binding / microtubule motor	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C23000087_at	PsAffx.C23000087	-	-	1e-1	At4g34770	auxin-responsive family protein	C.G.	S.X.	Please select
0.01	4e+0	34	PsAffx.C182000010_at	PsAffx.C182000010	-	-	2e+0	At3g24220	NCED6 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 6)	C.G.	S.X.	Please select
0.01	4e+0	34	HgAffx.8494.1.S1_at	CB380007	-	-	5e+0	At5g06650	GIS2 (GLABROUS INFLORESCENCE STEMS 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.22	7e-26	119	Arabidopsis thaliana	At4g19860	827730	lecithin:cholesterol acyltransferase family protein / LACT family protein	F:phosphatidylcholine-sterol O-acyltransferase activity;P:lipid metabolic process;C:cellular_component unknown;MOPBFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	7e-12	71	Hordeum vulgare	Contig8904_at	Contig8904	-	-	2e-8	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	C.G.	S.X.	Please select
0.07	3e-5	52	Oryza sativa	Os04g0615100	CB661558	-	Lecithin:cholesterol acyltransferase familyprotein	3e-4	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.25	3e-41	171	Populus trichocarpa	PtpAffx.22543.1.S1_at	DN497122	hypothetical protein	-	5e-26	At4g19860	lecithin:cholesterol acyltransferase family protein / LACT family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	6e-14	79	Triticum aestivum	TaAffx.110539.2.S1_at	CA664200	-	-	4e+0	At4g26310	elongation factor P (EF-P) family protein	C.G.	S.X.	Please select
0.03	2e-4	46	Vitis vinifera	1607117_at	CF515513	hypothetical protein LOC100255965	-	2e-2	At5g36960	unknown protein	C.G.	S.X.	Please select
0.01	3e-1	36	Zea mays	Zm.13265.1.A1_at	AY110086.1	-	-	1e-3	At1g12240	ATBETAFRUCT4	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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