CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.10781.1.S1_a_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.67 86.1 Gma.10781.1.S1_a_at AW101008 - - 7e-29 At2g38630 - S.X. H.G.
0.71 87.8 Gma.10781.2.A1_a_at BU547846 - - 5e-9 At3g54190 - S.X. H.G.
0.50 71.7 GmaAffx.93491.1.S1_s_at CF809216 - - 3e-1 At4g38280 unknown protein S.X. H.G.
0.50 71.7 GmaAffx.28102.1.S1_at BQ453371 - - 1e-50 At1g20575 dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative S.X. H.G.
0.44 63.3 Gma.2391.1.A1_at CD404263 - - 8e-12 At3g11530 vacuolar protein sorting 55 family protein / VPS55 family protein S.X. H.G.
0.44 63.3 GmaAffx.3678.1.S1_at BE806981 - - 6e+0 At5g46570 BSK2 (BR-SIGNALING KINASE 2) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.3 97.5 GSM293613 42_2054.2B.R307P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.5 96.6 GSM293390 74_1588.1Q.R230P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.4 96.4 GSM294132 86_3112.2G.R9G1P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.2 96.0 GSM292178 34-1006.1A.R003P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
3.1 95.8 GSM292843 22_C214.1L.V7L3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7 94.8 GSM292917 8_C216.1L.R9L3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7 94.8 GSM293335 24_1568.1Q.R156P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7 94.8 GSM293105 20_C054.1O.R9O3P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.6 94.5 GSM258500 Soybean shoot apical meristem, 6 short-day treatment GSE10251 Gene expression profiling implicates novel hormonal regulation of the floral initiation process in soybeans
2.6 94.5 GSM292890 65_C202.1L.R9L1P, Experimental replicate 1 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.56 0 710 GmaAffx.91578.1.S1_s_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
0.56 0 710 GmaAffx.91578.1.S1_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
0.56 0 710 GmaAffx.91578.1.S1_x_at CF807303 - - 6e-74 At3g54190 - C.G. S.X.
0.53 3e-164 579 Gma.10781.2.A1_a_at BU547846 - - 5e-9 At3g54190 - C.G. S.X.
0.29 3e-96 353 GmaAffx.90950.1.S1_at CF806675 - - 9e-18 At2g38630 - C.G. S.X.
0.19 1e-71 272 Gma.16657.2.S1_at AW756079 - - 7e-18 At3g54190 - C.G. S.X.
0.18 2e-32 141 GmaAffx.42903.1.S1_at CA801699 - - 8e-29 At2g38630 - C.G. S.X.
0.02 1e+0 36 GmaAffx.75876.1.S1_at BM269739 - - 7e-1 At3g55677 - C.G. S.X.
0.01 1e+0 36 Gma.4354.1.S1_at BI094851 - - 7e+0 At5g60553 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.48 7e-29 129 Arabidopsis thaliana At2g38630 818445 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO - - - C.G. S.X.
0.18 3e-20 99 Hordeum vulgare Contig3161_at Contig3161 - - 3e-19 At3g54190 - C.G. S.X.
0.25 5e-28 127 Oryza sativa Os05g0482600 AK120343.1 - WD40-like domain containing protein 3e-28 At3g54190 - C.G. S.X.
0.70 5e-166 585 Populus trichocarpa PtpAffx.211268.1.S1_at pmrna22106 hypothetical protein - 5e-66 At3g54190 - C.G. S.X.
0.10 5e-5 50 Triticum aestivum Ta.26748.1.S1_at CD491037 - - 4e-1 At2g38630 - C.G. S.X.
0.20 5e-61 234 Vitis vinifera 1617845_at CD800649 hypothetical protein LOC100263968 - 4e-35 At2g38630 - C.G. S.X.
0.09 2e-5 50 Zea mays Zm.2790.1.A1_at AW067260 hypothetical protein LOC100274410 - 1e-6 At3g54190 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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