Gene omics information

Query gene ID	Gma.10592.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.10592.1.S1_at	BG838982	-	-	3e-11	At5g42310	pentatricopeptide (PPR) repeat-containing protein	S.X.	H.G.	Please select
0.73	88.9	GmaAffx.88399.1.S1_at	CA819362	-	-	2e-49	At1g08520	CHLD	S.X.	H.G.	Please select
0.61	81.8	GmaAffx.58510.1.S1_at	BE209627	-	-	1e-35	At1g73110	ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative	S.X.	H.G.	Please select
0.55	76.3	Gma.15866.1.A1_at	CD418056	-	-	4e-38	At1g22700	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please select
0.50	71.7	Gma.4311.1.S1_at	CD410181	-	-	7e-3	At4g04830	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	S.X.	H.G.	Please select
0.40	57.1	Gma.2168.1.S1_at	CD413788	-	-	5e-14	At1g65260	PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
84.0	100.0	GSM238030	Soybean-2601R-2-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
63.7	99.9	GSM209589	resistant_48hours_rep2	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
52.8	99.9	GSM238047	Soybean-Mandarin-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
49.5	99.9	GSM209599	susceptible_48hours_rep3	GSE8432	Expression survey of Rpp1 soybean line PI200492 resistant to P. pachyrhizi
47.1	99.9	GSM238057	Soybean-S03W4-1-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
47.0	99.9	GSM238051	Soybean-Mandarin-7-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
45.6	99.9	GSM238048	Soybean-Mandarin-3-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
45.2	99.9	GSM238050	Soybean-Mandarin-6-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
41.7	99.9	GSM238049	Soybean-Mandarin-4-RMA	GSE9374	Exploration of microarrays as tools to assess substantial equivalence of genetically modified soybeans
40.9	99.9	GSM245937	Leaf_LCO treated_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	5e-17	89	Gma.10592.4.S1_at	BE805844	-	-	3e-3	At5g42310	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.01	6e-1	36	PsAffx.C144000042_at	PsAffx.C144000042	-	-	5e-2	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please select
0.03	6e-1	36	HgAffx.18679.1.S1_at	CA940502	-	-	4e+0	At5g02630	-	C.G.	S.X.	Please select
0.02	6e-1	36	GmaAffx.69683.1.S1_at	CA799656	-	-	7e-9	At5g17790	VAR3 (VARIEGATED 3)	C.G.	S.X.	Please select
0.03	2e+0	34	PsAffx.CL2577Contig1_s_at	PsAffx.CL2577Contig1	-	-	9e-1	At3g42148	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	PsAffx.CL2577Contig1_at	PsAffx.CL2577Contig1	-	-	9e-1	At3g42148	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	34	PsAffx.C37000071_at	PsAffx.C37000071	-	-	4e+0	At2g23960	defense-related protein, putative	C.G.	S.X.	Please select
0.01	9e+0	32	PsAffx.C979000001_at	PsAffx.C979000001	-	-	9e-1	At5g02960	40S ribosomal protein S23 (RPS23B)	C.G.	S.X.	Please select
0.01	9e+0	32	PsAffx.C71000082_at	PsAffx.C71000082	-	-	4e-1	At2g38730	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.18	3e-11	69	Arabidopsis thaliana	At5g42310	834236	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:chloroplast;POMFBA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	3e+0	32	Hordeum vulgare	Contig18674_at	Contig18674	-	-	5e-1	At1g67050	unknown protein	C.G.	S.X.	Please select
0.06	2e-10	67	Oryza sativa	Os07g0548300	NM_185739.1	-	CRP1	4e-6	At5g42310	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.19	1e-45	184	Populus trichocarpa	PtpAffx.205868.1.S1_at	pmrna11635	hypothetical protein	-	3e-44	At5g42310	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e+0	32	Triticum aestivum	TaAffx.8133.1.S1_at	CA634575	-	-	3e+0	At4g02482	chloroplast outer envelope GTP-binding protein, putative	C.G.	S.X.	Please select
0.02	5e-1	34	Vitis vinifera	1621793_at	CF405917	-	-	4e-34	At1g54100	ALDH7B4 (Aldehyde Dehydrogenase 7B4)	C.G.	S.X.	Please select
0.07	1e-8	59	Zea mays	Zm.4626.1.S1_at	AF073522.1	chloroplast RNA processing1	-	1e+0	At4g15955	epoxide hydrolase-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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