Gene omics information

Query gene ID	Gma.10455.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.6	Gma.10455.1.S1_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.83	92.5	Gma.10455.1.S1_s_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	S.X.	H.G.	Please select
0.63	82.9	Gma.6859.1.S1_s_at	AW309700	-	-	5e-13	At1g63970	ISPF	S.X.	H.G.	Please select
0.60	80.7	Gma.3107.1.S1_at	BE658900	-	-	1e-97	At5g62790	DXR (1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE)	S.X.	H.G.	Please select
0.55	76.3	GmaAffx.90026.1.S1_s_at	CF805751	-	-	5e-18	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select
0.50	71.7	Gma.11238.1.S1_at	BQ454110	-	-	3e-121	At5g60600	HDS (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE SYNTHASE)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.6	GSM294272	26_2427.2I.R297L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
6.1	98.5	GSM293226	15_C065.1P.R9P2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.9	98.0	GSM245933	Leaf_Water Control_Rep 1_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.9	98.0	GSM292359	28_C099.1F.V7F2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.8	97.9	GSM293600	30_2081.2B.R035L, Experimental replicate 2	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.7	97.8	GSM293025	2_C027.1N.V7N2L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292912	85_1467.1L.R284L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM292362	31_C095.1F.SLF1L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
4.6	97.7	GSM245934	Leaf_Water Control_Rep 2_48 h After Treatment	GSE9730	Effect of foliar spray of lipo-chitooligosaccharide (Nod factor) on soybean leaf gene expression.
4.6	97.7	GSM292842	21_1443.1L.R271L, Experimental replicate 1	GSE11611	Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	0	1189	Gma.10455.1.S1_s_at	BQ628953	-	-	3e-8	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please select
0.51	2e-149	529	GmaAffx.91463.1.S1_at	CF807188	-	-	3e-10	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please select
0.09	7e-16	85	Gma.13030.3.S1_at	BI094850	-	-	2e+0	At1g20405	unknown protein	C.G.	S.X.	Please select
0.01	6e-1	36	Gma.4906.1.S1_at	CD412790	-	-	2e-79	At5g04590	SIR	C.G.	S.X.	Please select
0.03	2e+0	34	GmaAffx.80937.1.S1_at	BM522804	-	-	6e-9	At5g07860	transferase family protein	C.G.	S.X.	Please select
0.02	2e+0	34	GmaAffx.22250.1.S1_at	BU550215	-	-	2e-6	At3g25780	AOC3 (ALLENE OXIDE CYCLASE 3)	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.3818.1.S1_at	BI471561	-	-	9e-2	At5g15581	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Gma.1539.1.S1_at	CA802612	-	-	5e-11	At5g67400	peroxidase 73 (PER73) (P73) (PRXR11)	C.G.	S.X.	Please select
0.01	9e+0	32	PsAffx.C64000026_at	PsAffx.C64000026	-	-	7e-1	At2g36053	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	3e-8	59	Arabidopsis thaliana	At4g34350	829585	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.22	9e-13	73	Hordeum vulgare	Contig3848_at	Contig3848	-	-	7e-23	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please select
0.20	1e-15	85	Oryza sativa	Os03g0731900	AK064873.1	-	Isopentenyl/dimethylallyl diphosphate synthase(Fragment)	8e-23	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.41	3e-83	309	Populus trichocarpa	PtpAffx.20254.1.S1_at	CV271880	hypothetical protein	-	3e-49	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	7e+0	32	Triticum aestivum	TaAffx.109268.1.S1_at	CA677759	-	-	4e+0	At4g19480	unknown protein	C.G.	S.X.	Please select
0.51	1e-81	301	Vitis vinifera	1607566_s_at	CF200894.1	hypothetical protein LOC100267479	-	3e-20	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please select
0.30	3e-18	91	Zea mays	Zm.4190.1.A1_at	BE344878	-	-	9e-31	At4g34350	HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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