Gene omics information

Query gene ID	Gma.10072.1.S1_at
Gene name
Organism	Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	90.3	Gma.10072.1.S1_at	CD399353	-	-	1e-11	At1g72970	HTH (HOTHEAD)	S.X.	H.G.	Please select
0.63	82.9	Gma.15814.1.A1_at	BI967506	-	-	1e-2	At4g03210	XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)	S.X.	H.G.	Please select
0.60	80.7	GmaAffx.70533.1.A1_at	CD407936	-	-	3e+0	Atmg00910	-	S.X.	H.G.	Please select
0.50	71.7	Gma.12819.1.A1_at	CD391420	-	-	3e+0	At4g23271	unknown protein	S.X.	H.G.	Please select
0.46	65.5	GmaAffx.62443.1.S1_at	AW099879	-	-	7e-1	At1g12470	Pep3/Vps18/deep orange family protein	S.X.	H.G.	Please select
0.43	60.6	Gma.10701.2.S1_at	AW101512	-	-	4e+0	At3g32130	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
256.5	100.0	GSM147946	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 2	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
218.3	100.0	GSM147947	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 3	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
214.4	100.0	GSM182040	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
150.4	100.0	GSM182039	Laser capture microdissected (LCM) epidermis at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
130.1	100.0	GSM182045	Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 1	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage
126.1	100.0	GSM191089	Soybean_Cotyledon_OI1	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
117.3	100.0	GSM147945	Laser capture microdissected (LCM) epidermis at the globular stage, biological replicate 1	GSE6414	Expression data from soybean seed compartments with embryos at the globular stage
116.5	100.0	GSM191090	Soybean_Cotyledon_OI2	GSE7881	Expression data from soybean seed compartments with embryos at the cotyledon stage
110.1	100.0	GSM201124	Laser capture microdissected (LCM) seed coat palisade at the early maturation stage, biological replicate 1	GSE8112	Expression data from soybean seed compartments with embryos at the early maturation stage
102.9	100.0	GSM182046	Laser capture microdissected (LCM) outer integument at the heart stage, biological replicate 2	GSE7511	Expression data from soybean seed compartments with embryos at the heart stage

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-3	44	Gma.16969.1.S1_s_at	BI968170	-	-	7e-8	At5g51950	glucose-methanol-choline (GMC) oxidoreductase family protein	C.G.	S.X.	Please select
0.02	1e+0	36	GmaAffx.29606.1.A1_at	CD402966	-	-	3e+0	At5g51370	F-box family protein	C.G.	S.X.	Please select
0.02	1e+0	36	GmaAffx.245.1.S1_at	AW309868	-	-	1e+0	At1g80230	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.01	1e+0	36	Gma.5111.2.S1_at	CD407770	-	-	3e-46	At5g50370	adenylate kinase, putative	C.G.	S.X.	Please select
0.02	1e+0	36	Gma.16191.1.S1_at	CD412156	-	-	1e-10	At5g51950	glucose-methanol-choline (GMC) oxidoreductase family protein	C.G.	S.X.	Please select
0.02	4e+0	34	PsAffx.psZO001iC09r_at	PsAffx.psZO001iC09r	-	-	3e-1	At5g46730	glycine-rich protein	C.G.	S.X.	Please select
0.02	4e+0	34	HgAffx.21711.1.S1_at	BI748212	-	-	3e-1	At5g38160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.02	4e+0	34	HgAffx.19505.1.S1_at	CA939675	-	-	6e-2	At5g15690	-	C.G.	S.X.	Please select
0.02	4e+0	34	GmaAffx.91701.1.S1_x_at	CF807426	pyridoxine biosynthesis protein	-	7e+0	At3g04270	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-11	71	Arabidopsis thaliana	At1g72970	843628	HTH (HOTHEAD)	Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.20	3e-17	89	Hordeum vulgare	Contig2265_at	Contig2265	-	-	4e-3	At1g72970	HTH (HOTHEAD)	C.G.	S.X.	Please select
0.16	6e-9	63	Oryza sativa	Os09g0363900	AK072899.1	-	Mandelonitrile lyase-like protein	1e-3	At1g72970	HTH (HOTHEAD)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.26	3e-25	117	Populus trichocarpa	PtpAffx.221521.1.S1_at	pmrna38448	hypothetical protein	-	2e-11	At1g72970	HTH (HOTHEAD)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	6e-17	89	Triticum aestivum	Ta.3651.1.S1_at	CK152094	-	-	1e-3	At1g12570	glucose-methanol-choline (GMC) oxidoreductase family protein	C.G.	S.X.	Please select
0.02	2e-1	36	Vitis vinifera	1610967_at	CF208096	-	-	3e+0	At3g14670	unknown protein	C.G.	S.X.	Please select
0.13	6e-18	91	Zea mays	Zm.1657.1.A1_at	BG842419	hypothetical protein LOC100192014	-	7e-2	At5g51950	glucose-methanol-choline (GMC) oxidoreductase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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