CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Gma.10004.1.S1_at

Gene name

Organism Glycine max

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 79.5 Gma.10004.1.S1_at BF070937 - - 6e-25 At5g36290 unknown protein S.X. H.G.
0.91 98.6 Gma.1913.1.S1_at BI970928 - - 0 At2g37620 ACT1 (ACTIN 1) S.X. H.G.
0.83 92.5 Gma.1324.1.S1_at BE658235 - - 1e-131 At4g35950 ARAC6 (ARABIDOPSIS RAC-LIKE 6) S.X. H.G.
0.80 91.5 Gma.7774.1.S1_at CD401719 - - 1e-26 At3g10540 3-phosphoinositide-dependent protein kinase, putative S.X. H.G.
0.80 91.5 Gma.15367.1.S1_at CD412241 - - 7e-60 At3g59910 - S.X. H.G.
0.67 86.1 Gma.2135.1.S1_a_at BE660424 - - 7e-1 At3g26400 EIF4B1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
211.0 100.0 GSM308559 Mature Soybean (Glycine max) pollen grains Replicate 2 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
206.7 100.0 GSM308560 Mature Soybean (Glycine max) pollen grains Replicate 3 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
95.1 100.0 GSM308556 Mature Soybean (Glycine max) pollen grains replicate 1 GSE12286 Genomic Expression Profiling of Mature Soybean (Glycine max) Pollen
4.0 97.2 GSM191087 Soybean_Cotyledon_II1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
3.6 96.7 GSM191088 Soybean_Cotyledon_II2 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
3.5 96.6 GSM309557 storage protein suppression expt, RNAi biol rep1, tech rep2 GSE12314 Storage Protein Suppression in Transgenic Soybean Cotyledons
3.0 95.6 GSM201112 Laser capture microdissected (LCM) cotyledon adaxial epidermis at the early maturation stage, biological replicate 1 GSE8112 Expression data from soybean seed compartments with embryos at the early maturation stage
2.9 95.4 GSM191075 Soybean_Cotyledon_EP1 GSE7881 Expression data from soybean seed compartments with embryos at the cotyledon stage
2.8 95.1 GSM293586 18_2092.2B.R298P, Experimental replicate 2 GSE11611 Combined gene expression and QTL analysis of soybean quantitative resistance to Phytophthora sojae
2.7 94.8 GSM309341 Wild type 1 GSE12300 Suppression of oleosin in soybean cotyledon
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.12 7e-47 188 GmaAffx.88413.1.S1_at BG046111 - - 9e-11 At5g36290 unknown protein C.G. S.X.
0.02 2e-1 38 Gma.4846.1.S1_at BI969505 - - 2e-35 At1g53320 AtTLP7 (TUBBY LIKE PROTEIN 7) C.G. S.X.
0.02 6e-1 36 GmaAffx.77917.1.S1_at BU965283 - - 1e-26 At5g13260 unknown protein C.G. S.X.
0.03 6e-1 36 Gma.4888.1.A1_at BI969600 - - 3e+0 At5g02540 short-chain dehydrogenase/reductase (SDR) family protein C.G. S.X.
0.01 3e+0 34 PsAffx.C151000024_at PsAffx.C151000024 - - 5e+0 At5g06760 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein C.G. S.X.
0.01 3e+0 34 PsAffx.C11000095_at PsAffx.C11000095 - - 8e-2 At1g44770 unknown protein C.G. S.X.
0.01 1e+1 32 PsAffx.C213000010_at PsAffx.C213000010 - - 1e+0 At4g31150 endonuclease V family protein C.G. S.X.
0.01 1e+1 32 PsAffx.C183000032_at PsAffx.C183000032 - - 5e+0 At4g11020 unknown protein C.G. S.X.
0.01 1e+1 32 PsAffx.C153000005_at PsAffx.C153000005 - - 1e+0 At5g63150 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.49 6e-25 115 Arabidopsis thaliana At5g36290 833627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BMOPFA - - - C.G. S.X.
0.16 2e-8 59 Hordeum vulgare Contig14363_at Contig14363 - - 4e-8 At5g36290 unknown protein C.G. S.X.
0.39 3e-19 97 Oryza sativa Os08g0528500 AK111028.1 - Protein of unknown function UPF0016 family protein 3e-2 At5g36290 unknown protein C.G. S.X.
0.42 8e-96 351 Populus trichocarpa PtpAffx.6482.1.S1_at CV260043 predicted membrane protein - 4e-82 At5g36290 unknown protein C.G. S.X.
0.07 5e-7 56 Triticum aestivum Ta.9324.2.S1_a_at CA659465 - - 4e-4 At5g36290 unknown protein C.G. S.X.
0.51 3e-95 347 Vitis vinifera 1611691_s_at CB980403 hypothetical protein LOC100265089 - 6e-59 At5g36290 unknown protein C.G. S.X.
0.25 1e-21 103 Zea mays Zm.5147.1.A1_at CK787170 - - 2e-25 At5g36290 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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