Gene omics information

Query gene ID	EBro08_SQ010_P03_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.23	26.1	EBro08_SQ010_P03_at	EBro08_SQ010_P03	-	-	5e-3	At1g23610	unknown protein	S.X.	H.G.	Please select
0.55	72.0	HVSMEl0012K16r2_at	HVSMEl0012K16r2	-	-	3e+0	At5g47050	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.53	69.7	Contig3281_s_at	Contig3281	-	-	2e-45	At5g57655	xylose isomerase family protein	S.X.	H.G.	Please select
0.50	66.9	Contig20816_at	Contig20816	-	-	1e-1	At4g36780	transcription regulator	S.X.	H.G.	Please select
0.40	53.1	Contig22727_at	Contig22727	-	-	2e+0	At4g38630	RPN10 (REGULATORY PARTICLE NON-ATPASE 10)	S.X.	H.G.	Please select
0.09	7.4	HA03C13u_at	HA03C13u	-	-	3e+0	At2g04630	NRPB6B	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
57.2	100.0	GSM398265	HS41-1_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
31.4	99.9	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
23.4	99.8	GSM71146	OWB-D unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
21.2	99.7	GSM398263	HS41-1_0d_rep3	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
18.8	99.7	GSM398262	HS41-1_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
12.0	99.3	GSM440980	Stressed seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
11.9	99.3	GSM398253	Martin_1d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
11.2	99.2	GSM398249	Martin_0d_rep1	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
10.7	99.2	GSM382234	Root_Hg3	GSE15295	Mercury toxicity in barley roots
9.1	98.9	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e-3	42	Contig2340_at	Contig2340	-	-	7e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	C.G.	S.X.	Please select
0.07	3e-3	42	Contig2339_at	Contig2339	-	-	5e-12	At4g15000	60S ribosomal protein L27 (RPL27C)	C.G.	S.X.	Please select
0.01	2e-1	36	Contig9994_at	Contig9994	-	-	7e-2	At5g60490	FLA12	C.G.	S.X.	Please select
0.01	2e-1	36	Contig6480_at	Contig6480	-	-	2e-1	At1g53280	DJ-1 family protein	C.G.	S.X.	Please select
0.02	6e-1	34	Contig7298_at	Contig7298	-	-	6e-13	At4g27700	rhodanese-like domain-containing protein	C.G.	S.X.	Please select
0.01	6e-1	34	Contig5354_at	Contig5354	-	-	4e-33	At5g06140	SNX1 (SORTING NEXIN 1)	C.G.	S.X.	Please select
0.02	6e-1	34	Contig18887_at	Contig18887	-	-	3e-8	At3g56210	binding	C.G.	S.X.	Please select
0.01	6e-1	34	Contig14610_at	Contig14610	-	-	5e-2	At2g44060	late embryogenesis abundant family protein / LEA family protein	C.G.	S.X.	Please select
0.01	6e-1	34	Contig8274_at	Contig8274	-	-	6e-15	At3g06810	IBR3 (IBA-RESPONSE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-3	42	Arabidopsis thaliana	At1g23610	838971	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.38	2e-34	147	Glycine max	GmaAffx.16449.1.A1_at	AW350577	-	-	1e+0	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please select
0.06	1e-2	42	Oryza sativa	Os02g0284600	AK121593.1	-	60S ribosomal protein L27	3e-11	At4g15000	60S ribosomal protein L27 (RPL27C)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.17	2e-6	54	Populus trichocarpa	Ptp.2837.1.A1_at	DN485500	-	-	7e-1	At2g32220	60S ribosomal protein L27 (RPL27A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.29	2e-48	192	Triticum aestivum	Ta.30889.1.S1_at	CN011561	-	-	2e-4	At2g32220	60S ribosomal protein L27 (RPL27A)	C.G.	S.X.	Please select
0.07	2e-9	61	Vitis vinifera	1620794_at	CF568783	-	-	3e-13	At4g15000	60S ribosomal protein L27 (RPL27C)	C.G.	S.X.	Please select
0.06	1e-5	50	Zea mays	Zm.14497.8.A1_x_at	CO527469	60S ribosomal protein L27 /// 60S ribosomal protein L27	-	2e-6	At3g22230	60S ribosomal protein L27 (RPL27B)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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