Gene omics information

Query gene ID	EBro08_SQ001_H04_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	EBro08_SQ001_H04_at	EBro08_SQ001_H04	-	-	1e+1	At5g23027	unknown protein	S.X.	H.G.	Please select
0.83	94.0	HVSMEa0012H02f2_at	HVSMEa0012H02f2	-	-	4e+0	At3g02555	unknown protein	S.X.	H.G.	Please select
0.55	72.0	HVSMEg0002G01r2_x_at	HVSMEg0002G01r2	-	-	6e+0	At5g39360	EDL2 (EID1-like 2)	S.X.	H.G.	Please select
0.53	69.7	EBro02_SQ008_P15_at	EBro02_SQ008_P15	-	-	1e+1	At5g43211	unknown protein	S.X.	H.G.	Please select
0.50	66.9	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	S.X.	H.G.	Please select
0.44	58.9	Contig14886_at	Contig14886	-	-	1e+0	At3g07860	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.1	98.0	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
5.8	97.8	GSM261032	Dicktoo control-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.8	97.8	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
5.6	97.7	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
5.2	97.4	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
4.8	97.0	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
4.2	96.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
4.2	96.3	GSM161221	cold treatment rep3	GSE6993	Barley low temperature stress
3.9	95.8	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.8	95.7	GSM160744	drought control rep2	GSE6990	Barley drought stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	32	Contig16012_at	Contig16012	-	-	3e+0	At3g57490	40S ribosomal protein S2 (RPS2D)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig13551_at	Contig13551	-	-	5e-4	At1g22050	MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig5153_at	Contig5153	chloroplast inner envelope protein-like	-	3e+0	At5g46860	VAM3	C.G.	S.X.	Please select
0.01	6e+0	30	Contig12296_at	Contig12296	-	-	2e-2	At4g29130	HXK1 (HEXOKINASE 1)	C.G.	S.X.	Please select
0.02	6e+0	30	Contig15771_at	Contig15771	-	-	1e-1	At1g02880	TPK1 (THIAMIN PYROPHOSPHOKINASE1)	C.G.	S.X.	Please select
0.03	6e+0	30	Contig10951_at	Contig10951	-	-	6e-10	At2g34690	ACD11 (ACCELERATED CELL DEATH 11)	C.G.	S.X.	Please select
0.02	6e+0	30	Contig6962_at	Contig6962	-	-	1e-1	At5g19473	-	C.G.	S.X.	Please select
0.01	6e+0	30	Contig3992_at	Contig3992	-	-	1e-40	At1g14670	endomembrane protein 70, putative	C.G.	S.X.	Please select
0.03	2e+1	28	HVSMEb0014C02r2_s_at	HVSMEb0014C02r2	-	-	8e-1	At4g30880	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+1	30	Arabidopsis thaliana	At5g23027	6241345	unknown protein	F:unknown;P:unknown;C:endomembrane system	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e+0	34	Glycine max	Gma.6473.1.S1_at	BQ611733	-	-	1e-13	At1g11340	S-locus lectin protein kinase family protein	C.G.	S.X.	Please select
0.05	2e+0	34	Oryza sativa	OsAffx.9115.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.45622.1.S1_at	BI127997	hypothetical protein	-	7e-2	At1g19430	dehydration-responsive protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	Ta.3443.2.S1_x_at	BJ207862	-	-	3e+0	At1g15580	IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1621521_at	CF518960	hypothetical protein LOC100245475 /// hypothetical protein LOC100252913 /// hypothetical protein LOC100253882	-	4e+0	At4g14110	COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9)	C.G.	S.X.	Please select
0.03	1e+0	32	Zea mays	Zm.12101.1.A1_at	AY106369.1	hypothetical protein LOC100276199	-	8e-2	At3g62770	AtATG18a	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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