Gene omics information

Query gene ID	EBro07_SQ002_B11_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	78.7	EBro07_SQ002_B11_at	EBro07_SQ002_B11	-	-	3e+0	At3g56380	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	S.X.	H.G.	Please select
0.75	89.5	Contig17953_at	Contig17953	-	-	2e+0	At3g47100	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig5490_at	Contig5490	-	-	3e-1	At3g14680	CYP72A14	S.X.	H.G.	Please select
0.60	77.3	Contig11946_at	Contig11946	-	-	2e+0	At1g49950	DNA-binding protein, putative	S.X.	H.G.	Please select
0.46	61.0	Contig4445_at	Contig4445	-	-	3e-1	At2g32190	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig13318_at	Contig13318	-	-	1e-2	At3g59010	pectinesterase family protein	S.X.	H.G.	Please select
0.46	61.0	Contig10453_at	Contig10453	-	-	9e-1	At5g19485	transferase	S.X.	H.G.	Please select
0.39	50.5	Contig18698_at	Contig18698	-	-	4e+0	At5g13080	WRKY75	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
21.5	99.8	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
21.1	99.7	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
18.3	99.7	GSM160819	38% SWC rep1	GSE6990	Barley drought stress
18.2	99.7	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
16.9	99.6	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
14.4	99.5	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
12.7	99.4	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
12.4	99.4	GSM261039	Dicktoo-deacclimation-rep1	GSE10329	Low temperature stress in cv. Dicktoo
11.8	99.3	GSM130805	JA and salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
11.2	99.2	GSM68899	8 h salt stressed replicate 2	GSE3097	Barley1 salinity stress study

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-3	42	Contig16913_at	Contig16913	-	-	4e+0	At5g37730	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	36	Contig10055_at	Contig10055	-	-	5e-8	At3g12740	ALIS1 (ALA-INTERACTING SUBUNIT 1)	C.G.	S.X.	Please select
0.02	4e-1	34	Contig6871_s_at	Contig6871	-	-	6e-11	At3g22290	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	34	Contig16510_at	Contig16510	-	-	9e+0	At5g18540	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	34	Contig6871_at	Contig6871	-	-	6e-11	At3g22290	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	32	Contig5748_at	Contig5748	-	-	6e-2	At4g32330	-	C.G.	S.X.	Please select
0.01	2e+0	32	Contig13614_at	Contig13614	-	-	6e-5	At3g10690	DNA gyrase subunit A family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Contig1778_s_at	Contig1778	-	-	2e+0	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	C.G.	S.X.	Please select
0.02	6e+0	30	Contig3716_at	Contig3716	-	-	4e-2	At4g37110	protein binding / zinc ion binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At3g56380	824805	ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17)	response regulator 17	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	HgAffx.15514.1.A1_at	CK349283	-	-	1e+1	At3g04620	nucleic acid binding	C.G.	S.X.	Please select
0.06	1e-1	38	Oryza sativa	Os.50654.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.222638.1.S1_at	pmrna40184	predicted membrane protein	-	4e+0	At3g51520	diacylglycerol acyltransferase family	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	6e-11	67	Triticum aestivum	Ta.16250.1.S1_at	CA603398	-	-	1e+1	At5g63085	-	C.G.	S.X.	Please select
0.04	1e-2	38	Vitis vinifera	1622169_at	CB981560	-	-	6e-2	At1g11570	nuclear transport factor 2 (NTF2), putative	C.G.	S.X.	Please select
0.03	9e-2	36	Zea mays	Zm.4596.1.A1_at	CF636987	lipoxygenase	-	4e-1	At5g17670	hydrolase, acting on ester bonds	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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