Gene omics information

Query gene ID	EBro04_SQ003_G13_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	EBro04_SQ003_G13_at	EBro04_SQ003_G13	-	-	2e+0	At5g44450	methyltransferase	S.X.	H.G.	Please select
0.73	88.7	EBro02_SQ004_K12_at	EBro02_SQ004_K12	-	-	5e+0	At5g09370	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	S.X.	H.G.	Please select
0.73	88.7	Contig10409_at	Contig10409	-	-	2e+0	At1g54200	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig25694_at	Contig25694	-	-	2e+0	At4g12860	UNE14 (unfertilized embryo sac 14)	S.X.	H.G.	Please select
0.55	72.0	Contig10168_at	Contig10168	-	-	3e-2	At5g26170	WRKY50	S.X.	H.G.	Please select
0.50	66.9	Contig10169_at	Contig10169	-	-	3e-13	At2g23390	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
35.4	99.9	GSM372963	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
31.3	99.9	GSM372998	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
26.6	99.8	GSM372981	genotype: 11542 - pathogen isolates: 5874 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
23.3	99.8	GSM372999	genotype: 11542 - pathogen isolates: K1 - time: 16 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
20.0	99.7	GSM372994	genotype: 11542 - pathogen isolates: K1 - time: 0 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
18.7	99.7	GSM372964	genotype: Mla6 - pathogen isolates: K1 - time: 16 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
12.1	99.3	GSM372985	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.6	99.3	GSM372987	genotype: 11542 - pathogen isolates: 5874 - time: 24 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
11.3	99.3	GSM372983	genotype: 11542 - pathogen isolates: 5874 - time: 20 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
10.6	99.2	GSM373004	genotype: 11542 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e-6	50	Contig4386_at	Contig4386	-	-	5e-2	At5g50470	NF-YC7 (NUCLEAR FACTOR Y, SUBUNIT C7)	C.G.	S.X.	Please select
0.03	2e-2	38	Contig9854_at	Contig9854	-	-	1e-4	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please select
0.05	2e-2	38	Contig9855_s_at	Contig9855	-	-	6e-5	At5g47220	ERF2 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2)	C.G.	S.X.	Please select
0.02	2e-1	34	Contig4148_s_at	Contig4148	-	-	3e-6	At1g07750	cupin family protein	C.G.	S.X.	Please select
0.04	4e+0	30	EBro08_SQ008_L03_at	EBro08_SQ008_L03	-	-	1e+0	At3g02640	unknown protein	C.G.	S.X.	Please select
0.05	4e+0	30	HI01A24w_at	HI01A24w	-	-	5e-1	At2g37600	60S ribosomal protein L36 (RPL36A)	C.G.	S.X.	Please select
0.03	4e+0	30	Contig15133_at	Contig15133	-	-	1e+0	At2g22345	-	C.G.	S.X.	Please select
0.01	4e+0	30	Contig12164_at	Contig12164	-	-	4e-12	At5g55760	SRT1 (sirtuin 1)	C.G.	S.X.	Please select
0.03	4e+0	30	Contig11597_at	Contig11597	-	-	1e-16	At2g23840	HNH endonuclease domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Arabidopsis thaliana	At5g44450	834472	methyltransferase	F:methyltransferase activity;P:biological_process unknown;C:chloroplast;MFOPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	7e-1	34	Glycine max	HgAffx.13962.1.S1_at	CB373971	-	-	9e-1	At5g42320	metallocarboxypeptidase/ zinc ion binding	C.G.	S.X.	Please select
0.05	1e-6	54	Oryza sativa	Os06g0649000	AK106282.1	-	The start codon is not identified.	7e-4	At1g80840	WRKY40	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	PtpAffx.204742.1.S1_at	pmrna9336	hypothetical protein	-	1e+0	At2g36630	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	2e-9	61	Triticum aestivum	TaAffx.23458.1.S1_at	CA734897	WRKY39 transcription factor	-	7e+0	At5g14300	ATPHB5 (PROHIBITIN 5)	C.G.	S.X.	Please select
0.04	2e+0	30	Vitis vinifera	1617337_at	CB346372	-	-	6e-2	At5g57560	TCH4 (Touch 4)	C.G.	S.X.	Please select
0.05	6e-2	36	Zea mays	Zm.6402.3.S1_a_at	AI770444	DELLA protein DWARF8 /// dwarf plant9	-	8e-1	At5g42635	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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