Gene omics information

Query gene ID	EBro02_SQ007_J14_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.60	77.3	EBro02_SQ007_J14_at	EBro02_SQ007_J14	-	-	2e+0	At2g22155	-	S.X.	H.G.	Please select
0.57	74.9	HV_CEb0010F15r2_at	HV_CEb0010F15r2	-	-	5e-6	At2g45500	ATP binding / nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.50	66.9	Contig22222_at	Contig22222	-	-	1e+0	At5g64160	unknown protein	S.X.	H.G.	Please select
0.46	61.0	Contig1518_at	Contig1518	-	-	3e-2	At3g05950	germin-like protein, putative	S.X.	H.G.	Please select
0.44	58.9	HY02O18u_s_at	HY02O18u	-	-	1e+1	At5g59870	HTA6	S.X.	H.G.	Please select
0.44	58.9	Contig3054_at	Contig3054	-	-	3e-5	At4g28050	TET7 (TETRASPANIN7)	S.X.	H.G.	Please select
0.44	58.9	Contig7492_s_at	Contig7492	-	-	4e-16	At3g14790	RHM3 (RHAMNOSE BIOSYNTHESIS 3)	S.X.	H.G.	Please select
0.35	45.1	Contig12916_s_at	Contig12916	-	-	1e-2	At3g11180	oxidoreductase, 2OG-Fe(II) oxygenase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.2	99.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
24.6	99.8	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
21.1	99.7	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
15.9	99.6	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
15.7	99.6	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.3	99.4	GSM238410	Pericarp 8DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
8.4	98.8	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
8.1	98.7	GSM238408	Pericarp 4DAF; seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
7.9	98.7	GSM431572	pathogen isolates: Polymyxa betae - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
7.7	98.6	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	Contig14056_at	Contig14056	-	-	6e-20	At3g16060	kinesin motor family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Contig1518_at	Contig1518	-	-	3e-2	At3g05950	germin-like protein, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Contig10758_at	Contig10758	-	-	2e-10	At3g22190	IQD5 (IQ-domain 5)	C.G.	S.X.	Please select
0.04	1e+0	32	Contig8535_s_at	Contig8535	-	-	5e-3	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	C.G.	S.X.	Please select
0.04	1e+0	32	Contig8535_at	Contig8535	-	-	5e-3	At1g76180	ERD14 (EARLY RESPONSE TO DEHYDRATION 14)	C.G.	S.X.	Please select
0.02	5e+0	30	Contig5918_at	Contig5918	-	-	9e-6	At3g60340	palmitoyl protein thioesterase family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Contig2900_at	Contig2900	-	-	7e-1	At4g36540	BEE2 (BR Enhanced Expression 2)	C.G.	S.X.	Please select
0.04	5e+0	30	Contig1557_at	Contig1557	-	-	3e-23	At3g60245	60S ribosomal protein L37a (RPL37aC)	C.G.	S.X.	Please select
0.03	5e+0	30	rbags16o11_at	rbags16o11	-	-	2e-2	At4g35020	ARAC3 (ARABIDOPSIS RAC-LIKE 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	2e+0	32	Arabidopsis thaliana	At2g22155	5007900	-	Encodes a ECA1 gametogenesis related family protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e-2	38	Glycine max	GmaAffx.22557.1.S1_at	BG157345	-	-	2e-1	At3g29160	AKIN11 (Arabidopsis SNF1 kinase homolog 11)	C.G.	S.X.	Please select
0.06	1e-6	54	Oryza sativa	Os03g0725800	AK120539.1	-	Basic helix-loop-helix dimerisation region bHLHdomain containing protein	6e-2	At1g15840	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	PtpAffx.217305.1.S1_at	pmrna32507	-	-	2e-5	At5g07140	protein kinase family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	Ta.12256.1.A1_at	BQ171958	-	-	7e-1	At2g17800	ARAC1	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1608996_at	CD799388	hypothetical protein LOC100242063	-	1e-8	At5g42920	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Zea mays	Zm.8104.1.A1_at	BM072941	-	-	4e+0	At1g04945	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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