Gene omics information

Query gene ID	EBro02_SQ006_L04_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	EBro02_SQ006_L04_x_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	S.X.	H.G.	Please select
0.77	90.8	EBro02_SQ006_L04_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	S.X.	H.G.	Please select
0.50	66.9	HI05D22u_at	HI05D22u	-	-	7e-2	At5g58860	CYP86A1 (CYTOCHROME P450 86 A1)	S.X.	H.G.	Please select
0.36	47.1	Contig6728_at	Contig6728	-	-	6e-1	At5g23030	TET12 (TETRASPANIN12)	S.X.	H.G.	Please select
0.36	47.1	Contig10720_at	Contig10720	-	-	1e-39	At1g22620	ATSAC1 (suppressor of actin 1)	S.X.	H.G.	Please select
0.33	42.6	Contig25140_at	Contig25140	-	-	1e-10	At2g47570	60S ribosomal protein L18 (RPL18A)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.0	99.9	GSM431546	pathogen isolates: Mock - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
42.0	99.9	GSM431549	pathogen isolates: Polymyxa graminis - rep1	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
27.7	99.8	GSM431550	pathogen isolates: Polymyxa graminis - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
17.9	99.7	GSM431547	pathogen isolates: Mock - rep2	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
17.0	99.6	GSM431568	pathogen isolates: Mock inoculated control - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
15.7	99.6	GSM431569	pathogen isolates: Mock inoculated control - rep2	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
15.0	99.5	GSM431573	pathogen isolates: Polymyxa betae - rep3	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae
14.5	99.5	GSM431551	pathogen isolates: Polymyxa graminis - rep3	GSE17238	Response of barley roots during the host interaction with the plasmodiophorid virus vector Polymyxa graminis
12.3	99.4	GSM261042	before 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
11.9	99.3	GSM431571	pathogen isolates: Polymyxa betae - rep1	GSE17240	Response of barley roots during the non-host interaction with the plasmodiophorid virus vector Polymyxa betae

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.90	1e-79	293	EBro02_SQ006_L04_at	EBro02_SQ006_L04	-	-	2e+1	At5g39010	unknown protein	C.G.	S.X.	Please select
0.06	1e-1	34	HVSMEc0002N01f2_s_at	HVSMEc0002N01f2	-	-	1e+1	At5g43245	unknown protein	C.G.	S.X.	Please select
0.06	1e-1	34	HVSMEc0002N01f2_at	HVSMEc0002N01f2	-	-	1e+1	At5g43245	unknown protein	C.G.	S.X.	Please select
0.06	6e-1	32	HW09B15u_at	HW09B15u	-	-	3e+0	At3g44210	unknown protein	C.G.	S.X.	Please select
0.01	2e+0	30	Contig3148_at	Contig3148	-	-	2e-5	At1g09940	HEMA2	C.G.	S.X.	Please select
0.04	9e+0	28	Contig5050_s_at	Contig5050	-	-	8e-2	At1g26920	unknown protein	C.G.	S.X.	Please select
0.02	9e+0	28	Contig5406_x_at	Contig5406	-	-	6e-1	At3g56190	ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN 2)	C.G.	S.X.	Please select
0.05	9e+0	28	Contig2495_s_at	Contig2495	-	-	1e+1	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	C.G.	S.X.	Please select
0.04	9e+0	28	HVSMEf0015D09r2_at	HVSMEf0015D09r2	-	-	9e-1	At5g38320	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+1	28	Arabidopsis thaliana	At5g39010	833893	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	7e+0	30	Glycine max	GmaAffx.66744.1.S1_at	AW703819	-	-	1e-1	At1g53760	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	Oryza sativa	Os.39505.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	36	Populus trichocarpa	PtpAffx.161420.1.S1_at	CK116833	hypothetical protein	-	1e-25	At5g52570	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	2e-20	97	Triticum aestivum	TaAffx.81240.1.S1_at	AJ613718	-	-	2e+1	At5g41430	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.05	5e+0	28	Vitis vinifera	1619693_at	CF204272.1	-	-	8e-4	At4g00430	PIP1	C.G.	S.X.	Please select
0.05	8e+0	28	Zea mays	ZmAffx.611.1.A1_at	AI715039	-	-	1e+1	At5g13340	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage