Gene omics information

Query gene ID	EBro01_SQ003_J07_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	EBro01_SQ003_J07_at	EBro01_SQ003_J07	-	-	3e+0	At1g66475	unknown protein	S.X.	H.G.	Please select
0.44	58.9	HV_CEb0020I07f2_x_at	HV_CEb0020I07f2	-	-	2e+0	At4g14950	unknown protein	S.X.	H.G.	Please select
0.36	47.1	HVSMEk0017M22r2_at	HVSMEk0017M22r2	-	-	1e+0	At2g34440	AGL29 (AGAMOUS-LIKE 29)	S.X.	H.G.	Please select
0.33	42.6	Contig21272_at	Contig21272	-	-	4e-7	At2g42810	PP5.2 (PROTEIN PHOSPHATASE 5.2)	S.X.	H.G.	Please select
0.31	38.6	EBpi01_SQ003_C12_at	EBpi01_SQ003_C12	-	-	5e-2	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.12	10.4	HA10K08u_x_at	HA10K08u	-	-	4e+0	At1g15830	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.6	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
5.4	97.5	GSM161148	7% SWC rep3	GSE6990	Barley drought stress
3.8	95.7	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.6	95.3	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
3.4	94.8	GSM372960	genotype: Mla6 - pathogen isolates: K1 - time: 8 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.4	94.8	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds
3.3	94.6	GSM372954	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep2	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.2	94.3	GSM261041	Dicktoo-deacclimation-rep3	GSE10329	Low temperature stress in cv. Dicktoo
3.2	94.3	GSM372973	genotype: Mla6 - pathogen isolates: K1 - time: 32 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.1	94.1	GSM372967	genotype: Mla6 - pathogen isolates: K1 - time: 20 - rep3	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	32	Contig21929_at	Contig21929	-	-	3e-1	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select
0.02	1e+0	32	M95172_at	M95172	-	-	4e-30	At5g46290	KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig15294_at	Contig15294	-	-	8e-6	At1g01510	AN (ANGUSTIFOLIA)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig10274_at	Contig10274	-	-	5e+0	At5g23030	TET12 (TETRASPANIN12)	C.G.	S.X.	Please select
0.02	6e+0	30	Contig15406_at	Contig15406	-	-	7e-3	At5g39940	-	C.G.	S.X.	Please select
0.02	6e+0	30	Contig8060_at	Contig8060	-	-	6e-1	At5g66700	HB53	C.G.	S.X.	Please select
0.01	6e+0	30	Contig7184_at	Contig7184	-	-	8e-2	At4g26690	SHV3 (SHAVEN 3)	C.G.	S.X.	Please select
0.02	6e+0	30	Contig5426_s_at	Contig5426	-	-	1e-1	At3g47160	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	6e+0	30	Contig5424_at	Contig5424	-	-	6e-1	At1g80400	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	3e+0	32	Arabidopsis thaliana	At1g66475	6240639	unknown protein	F:unknown;P:unknown;C:unknown	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-1	36	Glycine max	HgAffx.22441.1.S1_at	BI748909	-	-	2e-1	At1g20340	DRT112	C.G.	S.X.	Please select
0.03	1e+0	34	Oryza sativa	Os10g0101900	AK064524.1	-	Hypothetical protein	7e+0	At5g15460	MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e+0	34	Populus trichocarpa	PtpAffx.5981.1.A1_at	CV226706	-	-	2e+0	At2g44525	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	Ta.16860.1.S1_at	CA613922	-	-	2e+0	At3g27840	RPL12-B (ribosomal protein l12-b)	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1611371_at	CF215802	-	-	4e+0	At5g64360	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zea mays	Zm.8693.1.A1_a_at	CF633440	-	-	1e-2	At3g56940	CRD1 (COPPER RESPONSE DEFECT 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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