CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID EBpi07_SQ002_E06_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.55 72.0 EBpi07_SQ002_E06_at EBpi07_SQ002_E06 - - 2e+0 At1g44835 YbaK/prolyl-tRNA synthetase family protein S.X. H.G.
0.93 98.7 Contig12750_at Contig12750 - - 5e-1 At5g28630 glycine-rich protein S.X. H.G.
0.88 95.2 HA20A06r_at HA20A06r - - 2e-1 At1g61820 BGLU46 (BETA GLUCOSIDASE 46) S.X. H.G.
0.88 95.2 Contig8260_s_at Contig8260 - - 2e+0 At1g65230 unknown protein S.X. H.G.
0.86 94.8 Contig15825_at Contig15825 - - 8e+0 At5g03020 kelch repeat-containing F-box family protein S.X. H.G.
0.86 94.8 Contig3122_at Contig3122 - - 1e+0 At5g66815 unknown protein S.X. H.G.
0.80 92.5 Contig14594_at Contig14594 - - 5e-17 At5g54080 HGO (HOMOGENTISATE 1,2-DIOXYGENASE) S.X. H.G.
0.80 92.5 Contig5567_s_at Contig5567 - - 8e-35 At4g13430 IIL1 (ISOPROPYL MALATE ISOMERASE LARGE SUBUNIT 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
226.6 100.0 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
108.6 100.0 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
34.4 99.9 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
28.9 99.9 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
1.8 87.4 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
1.4 83.1 GSM238410 Pericarp 8DAF; seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
0.3 52.6 GSM440978 Stressed seed_Rep1 GSE17669 Gene expression in the barley spike during drought stress
0.1 39.4 GSM419982 Seed_Rep2 GSE16754 Comparative transcriptional profiling of organs of the barley spike
0.1 39.4 GSM440976 Control seed_Rep2 GSE17669 Gene expression in the barley spike during drought stress
0.1 39.4 GSM238409 Pericarp 4DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 32 Contig12296_at Contig12296 - - 2e-2 At4g29130 HXK1 (HEXOKINASE 1) C.G. S.X.
0.02 1e+0 32 Contig1352_at Contig1352 - - 6e-7 At3g47810 MAG1 (MAIGO 1) C.G. S.X.
0.03 4e+0 30 Contig17563_at Contig17563 - - 2e+0 At4g01915 unknown protein C.G. S.X.
0.02 4e+0 30 Contig26384_at Contig26384 - - 5e-1 Atmg00130 - C.G. S.X.
0.01 4e+0 30 Contig9033_at Contig9033 - - 9e-1 At4g17920 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 2e+1 28 Contig17975_at Contig17975 - - 2e+0 At4g01520 anac067 (Arabidopsis NAC domain containing protein 67) C.G. S.X.
0.02 2e+1 28 Contig12238_at Contig12238 - - 5e-5 At5g48160 OBE2 (OBERON2) C.G. S.X.
0.02 2e+1 28 Contig5237_at Contig5237 - - 7e-7 At1g08570 ACHT4 (ATYPICAL CYS HIS RICH THIOREDOXIN 4) C.G. S.X.
0.02 2e+1 28 Contig2281_at Contig2281 - - 1e+1 At4g01516 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e+0 32 Arabidopsis thaliana At1g44835 841048 YbaK/prolyl-tRNA synthetase family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPF - - - C.G. S.X.
0.04 7e-1 34 Glycine max Gma.17858.2.S1_at BQ786412 - - 2e-8 At3g48120 unknown protein C.G. S.X.
0.04 4e+0 32 Oryza sativa Os01g0953600 AK071823.1 - NADPH-dependent FMN reductase family protein 8e-3 At3g27890 NQR (NADPH:QUINONE OXIDOREDUCTASE) C.G. S.X.
0.06 3e+0 32 Populus trichocarpa PtpAffx.111866.1.S1_at BU102300 hypothetical protein - 4e-11 At3g54190 - C.G. S.X.
0.05 9e+0 30 Triticum aestivum TaAffx.51485.1.S1_x_at CA724423 - - 4e+1 At5g03345 - C.G. S.X.
0.07 4e+1 26 Vitis vinifera 1622357_s_at CF569217.1 - - 3e-1 At2g37610 unknown protein C.G. S.X.
0.04 1e+1 28 Zea mays Zm.6779.2.S1_a_at AY107207.1 - - 3e+0 At4g21460 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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