Gene omics information

Query gene ID EBpi03_SQ003_B07_at
Gene name
Organism Hordeum vulgare


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionEvAGI codeArabidopsis gene nameS.X.H.G.Other DB
0.9699.4EBpi03_SQ003_B07_atEBpi03_SQ003_B07--2e-1At1g53160SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)S.X.H.G.
0.3950.5Contig8483_atContig8483--6e-14At1g02000GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2)S.X.H.G.
0.2732.1Contig12495_atContig12495--4e-11At4g31790diphthine synthase, putative (DPH5)S.X.H.G.
0.2224.2Contig2937_s_atContig2937--9e-27At3g25800PP2AA2 (PROTEIN PHOSPHATASE 2A SUBUNIT A2)S.X.H.G.
0.1716.9Contig4599_s_atContig4599--2e-1At4g36740ATHB40 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 40)S.X.H.G.
0.1615.3Contig633_x_atContig633--1e-15At2g4020560S ribosomal protein L41 (RPL41C)S.X.H.G.
0.1311.6Contig10332_atContig10332--1e-11At1g69390ATMINE1 (Arabidopsis homologue of bacterial MinE 1)S.X.H.G.
0.086.5HVSMEm0009E22r2_x_atHVSMEm0009E22r2--5e+0At5g13720-S.X.H.G.
0.075.8Contig26395_atContig26395--5e+0At5g07460PMSR2 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 2)S.X.H.G.
0.075.8HVSMEc0007N02r2_atHVSMEc0007N02r2--3e-1At1g01380ETC1 (ENHANCER OF TRY AND CPC 1)S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.299.7GSM238408Pericarp 4DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
15.999.6GSM238418Endosperm 25DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
7.298.5GSM238410Pericarp 8DAF; seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
6.998.3GSM238419Endosperm 25DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
6.097.9GSM238417Endosperm 16DAF; Seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
6.097.9GSM238416Endosperm 16DAF; Seed development; Rep 1GSE9365Expression data from barley maturing and germinating grains
5.297.4GSM282033Malting_day4_Harrington_rep4GSE11200Expression data from malting barley seeds
3.795.5GSM238411Pericarp 8DAF; seed development; Rep 2GSE9365Expression data from barley maturing and germinating grains
3.695.3GSM282031Malting_day1_Harrington_rep1GSE11200Expression data from malting barley seeds
3.394.6GSM261071Albina f-17 Hardened rep1GSE10332Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.023e-134Contig16198_atContig16198--1e-5At3g10630glycosyl transferase family 1 proteinC.G.S.X.
0.023e-134Contig8492_atContig8492--2e-1At1g63205-C.G.S.X.
0.031e+032Contig13240_s_atContig13240--4e-1At3g24750unknown proteinC.G.S.X.
0.031e+032Contig12516_s_atContig12516--3e-9At5g19490DNA binding / sequence-specific DNA bindingC.G.S.X.
0.031e+032Contig12516_atContig12516--3e-9At5g19490DNA binding / sequence-specific DNA bindingC.G.S.X.
0.021e+032Contig7611_atContig7611--2e-7At4g34840ATMTN2C.G.S.X.
0.035e+030HV_CEb0010N06r2_atHV_CEb0010N06r2--1e+0At2g34270unknown proteinC.G.S.X.
0.035e+030HU05J18u_atHU05J18u--4e+0At5g50800nodulin MtN3 family proteinC.G.S.X.
0.045e+030EBro08_SQ009_K19_atEBro08_SQ009_K19--1e+1At5g03345-C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.062e-136Arabidopsis thalianaAt1g53160841749SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR.---C.G.S.X.
0.032e-136Glycine maxHgAffx.8084.1.A1_atCB824127--4e-1At4g27310zinc finger (B-box type) family proteinC.G.S.X.
0.114e-25115Oryza sativaOs08g0513700AK104160.1-SBP domain containing protein4e-15At3g10920MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1)C.G.S.X.
0.099e-134Populus trichocarpaPtpAffx.221046.1.S1_atpmrna37598hypothetical protein-7e-6At1g53160SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4)C.G.S.X.
0.396e-57220Triticum aestivumTaAffx.53348.1.S1_atCA693390--1e-3At1g75550glycine-rich proteinC.G.S.X.
0.033e+030Vitis vinifera1618609_s_atBQ800563hypothetical protein LOC100249094-1e+0At4g28556RIC7C.G.S.X.
0.057e-236Zea maysZmAffx.1134.1.A1_atAW331087--8e-1At4g10270wound-responsive family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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