CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID EBpi01_SQ004_D06_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.93 98.7 EBpi01_SQ004_D06_s_at EBpi01_SQ004_D06 - - 6e+0 At1g54870 binding / catalytic/ oxidoreductase S.X. H.G.
0.31 38.6 Contig4372_s_at Contig4372 - - 9e-1 At1g76470 3-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductase S.X. H.G.
0.29 35.5 Contig5856_at Contig5856 - - 2e+0 At4g24420 RNA recognition motif (RRM)-containing protein S.X. H.G.
0.29 35.5 Contig6733_at Contig6733 - - 6e-2 At3g44720 ADT4 (arogenate dehydratase 4) S.X. H.G.
0.28 35.5 HV02E01u_at HV02E01u - - 8e-1 At5g35069 unknown protein S.X. H.G.
0.27 32.1 HVSMEl0011L15f2_s_at HVSMEl0011L15f2 - - 4e-2 At5g02500 HSC70-1 (HEAT SHOCK COGNATE PROTEIN 70-1) S.X. H.G.
0.25 28.9 HY08D02u_s_at HY08D02u - - 6e+0 At2g31180 MYB14 (MYB DOMAIN PROTEIN 14) S.X. H.G.
0.22 24.2 HVSMEl0005F20r2_at HVSMEl0005F20r2 - - 2e+0 At5g32440 - S.X. H.G.
0.22 24.2 HU07L18r_s_at HU07L18r - - 2e+0 At3g07450 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein S.X. H.G.
0.22 24.2 Contig2700_x_at Contig2700 - - 1e+0 At1g23890 NHL repeat-containing protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
9.6 99.0 GSM282030 Malting_day4_Harrington_rep2 GSE11200 Expression data from malting barley seeds
8.9 98.9 GSM238427 Endosperm 72 h; Seed germination; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
7.3 98.5 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
6.9 98.3 GSM238426 Endosperm 72 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.5 98.2 GSM71145 OWB-D unstress replicate 1 GSE3170 Barley single feature polymorphisms and drought stress gene expression
6.3 98.1 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
6.0 97.9 GSM238424 Endosperm 48 h; Seed germination; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.7 97.7 GSM71146 OWB-D unstress replicate 2 GSE3170 Barley single feature polymorphisms and drought stress gene expression
5.2 97.4 GSM71147 OWB-D unstress replicate 3 GSE3170 Barley single feature polymorphisms and drought stress gene expression
5.0 97.2 GSM215731 gibberellin treatment rep2 GSE8712 The effects of Yariv-reagent on barley aleurone GA signaling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 7e-29 125 Contig2680_at Contig2680 - - 2e-16 At4g01610 cathepsin B-like cysteine protease, putative C.G. S.X.
0.14 2e-10 63 Contig12584_s_at Contig12584 - - 8e-1 At3g15540 IAA19 (INDOLE-3-ACETIC ACID INDUCIBLE 19) C.G. S.X.
0.03 1e-8 57 Contig2736_s_at Contig2736 - - 3e-4 At1g02850 BGLU11 (BETA GLUCOSIDASE 11) C.G. S.X.
0.07 8e-7 52 HV05I05u_at HV05I05u - - 1e+0 At5g09640 SCPL19 C.G. S.X.
0.11 8e-7 52 Contig17311_at Contig17311 - - 4e-1 At3g20120 CYP705A21 C.G. S.X.
0.11 3e-6 50 HT07P04u_at HT07P04u - - 3e-3 At2g19570 CDA1 (CYTIDINE DEAMINASE 1) C.G. S.X.
0.08 3e-6 50 Contig20845_at Contig20845 - - 5e+0 At5g28360 ACS3 (1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE LIKE PSEUDOGENE) C.G. S.X.
0.07 2e-4 44 Contig25340_at Contig25340 - - 8e-36 At1g31800 CYP97A3 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3) C.G. S.X.
0.08 2e-4 44 Contig6938_at Contig6938 - - 1e+0 At1g45145 ATTRX5 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e+0 30 Arabidopsis thaliana At1g54870 841926 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAV - - - C.G. S.X.
0.04 9e+0 30 Glycine max PsAffx.C124000048_at PsAffx.C124000048 - - 9e-1 At1g53620 unknown protein C.G. S.X.
0.06 3e+0 32 Oryza sativa Os08g0465201 9636.m03640 - - 3e+0 At4g29905 unknown protein C.G. S.X.
0.04 6e-1 34 Populus trichocarpa PtpAffx.65220.1.A1_at CK090302 hypothetical protein - 9e-2 At5g35120 unknown protein C.G. S.X.
0.08 7e-3 40 Triticum aestivum Ta.8132.1.S1_at BQ161400 - - 5e-1 At1g72290 trypsin and protease inhibitor family protein / Kunitz family protein C.G. S.X.
0.05 8e+0 28 Vitis vinifera 1619016_at CF405546 - - 1e+1 At4g16295 SPH1 (S-PROTEIN HOMOLOGUE 1) C.G. S.X.
0.05 1e+1 28 Zea mays ZmAffx.1184.1.S1_at AW927978 hypothetical protein LOC100273162 - 1e-2 At2g38640 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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