Gene omics information

Query gene ID	EBpi01_SQ003_C12_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	84.7	EBpi01_SQ003_C12_s_at	EBpi01_SQ003_C12	-	-	5e-2	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.60	77.3	EBpi01_SQ003_C12_at	EBpi01_SQ003_C12	-	-	5e-2	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	S.X.	H.G.	Please select
0.43	56.4	Contig1548_at	Contig1548	-	-	1e-54	At5g10360	EMB3010 (embryo defective 3010)	S.X.	H.G.	Please select
0.38	49.5	Contig24661_at	Contig24661	-	-	1e-2	At3g22070	proline-rich family protein	S.X.	H.G.	Please select
0.27	32.1	HVSMEk0017M22r2_at	HVSMEk0017M22r2	-	-	1e+0	At2g34440	AGL29 (AGAMOUS-LIKE 29)	S.X.	H.G.	Please select
0.22	24.2	HD05C22r_at	HD05C22r	-	-	1e+0	At3g51810	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	S.X.	H.G.	Please select
0.19	19.6	Contig14685_at	Contig14685	-	-	5e+0	At3g52525	OFP6 (OVATE FAMILY PROTEIN 6)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.5	98.6	GSM261038	Dicktoo-subzero-rep3	GSE10329	Low temperature stress in cv. Dicktoo
5.6	97.7	GSM261037	Dicktoo-subzero-rep2	GSE10329	Low temperature stress in cv. Dicktoo
5.4	97.5	GSM261036	Dicktoo-subzero-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.7	96.9	GSM261055	Bonus Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.6	96.8	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
4.2	96.3	GSM261054	Bonus Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
3.4	94.8	GSM261034	Dicktoo-chilling-rep2	GSE10329	Low temperature stress in cv. Dicktoo
3.3	94.6	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
3.2	94.3	GSM372953	genotype: Mla6 - pathogen isolates: 5874 - time: 32 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene
3.0	93.8	GSM372968	genotype: Mla6 - pathogen isolates: K1 - time: 24 - rep1	GSE14930	Comparison of wild-type and cell death mutant of barley plants containing Mla6 powdery mildew resistance gene

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.95	0	690	EBpi01_SQ003_C12_at	EBpi01_SQ003_C12	-	-	5e-2	At4g35260	IDH1 (ISOCITRATE DEHYDROGENASE 1)	C.G.	S.X.	Please select
0.33	3e-122	436	Contig3106_at	Contig3106	-	-	2e+0	At4g14420	lesion inducing protein-related	C.G.	S.X.	Please select
0.09	5e-25	113	Contig11289_at	Contig11289	-	-	7e-1	At4g26340	F-box family protein	C.G.	S.X.	Please select
0.07	8e-18	89	Contig2908_at	Contig2908	-	-	5e-36	At5g14040	mitochondrial phosphate transporter	C.G.	S.X.	Please select
0.11	1e-16	85	Contig3856_at	Contig3856	-	-	1e-19	At1g52600	signal peptidase, putative	C.G.	S.X.	Please select
0.25	3e-14	77	HB04L12r_at	HB04L12r	-	-	4e+0	At5g55360	long-chain-alcohol O-fatty-acyltransferase family protein / wax synthase family protein	C.G.	S.X.	Please select
0.08	2e-12	71	HU11J14u_at	HU11J14u	-	-	4e+0	At5g19900	PRLI-interacting factor, putative	C.G.	S.X.	Please select
0.04	7e-12	69	Contig6720_at	Contig6720	-	-	6e-1	At5g08150	unknown protein	C.G.	S.X.	Please select
0.03	2e-9	61	Contig7860_at	Contig7860	-	-	6e-2	At3g10730	sad1/unc-84-like 2 family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	5e-2	38	Arabidopsis thaliana	At4g35260	829679	IDH1 (ISOCITRATE DEHYDROGENASE 1)	NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	Gma.15054.1.A1_at	CD401577	-	-	3e+0	At2g34580	unknown protein	C.G.	S.X.	Please select
0.05	1e-1	38	Oryza sativa	Os.39183.1.A1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e+0	32	Populus trichocarpa	PtpAffx.98176.1.S1_at	BU889542	SAUR family protein /// SAUR family protein	-	2e+0	At4g30390	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.32	2e-51	202	Triticum aestivum	TaAffx.57364.1.S1_at	CA630595	-	-	2e-1	At4g22610	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1620221_at	CF517910	-	-	1e+0	At5g37440	DNAJ heat shock N-terminal domain-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zea mays	ZmAffx.1457.1.S1_at	11990232-24	-	-	1e-83	Atcg00380	-	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage