Gene omics information

Query gene ID	EBpi01_SQ002_G19_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	87.1	EBpi01_SQ002_G19_at	EBpi01_SQ002_G19	-	-	2e+0	At3g16440	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	S.X.	H.G.	Please select
0.86	94.8	Contig949_at	Contig949	-	-	8e-28	At1g29910	CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)	S.X.	H.G.	Please select
0.77	90.8	HVSMEk0006G04r2_at	HVSMEk0006G04r2	-	-	2e-1	At4g37790	HAT22	S.X.	H.G.	Please select
0.77	90.8	Contig394_at	Contig394	-	-	1e+0	At5g42850	-	S.X.	H.G.	Please select
0.77	90.8	Contig8821_at	Contig8821	-	-	4e-9	At5g45190	cyclin family protein	S.X.	H.G.	Please select
0.71	87.1	EBan01_SQ005_B22_s_at	EBan01_SQ005_B22	-	-	5e+0	At1g30630	coatomer protein epsilon subunit family protein / COPE family protein	S.X.	H.G.	Please select
0.67	84.7	Contig20753_at	Contig20753	-	-	5e-7	At2g20900	diacylglycerol kinase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
201.7	100.0	GSM261047	after 3 days in mannitol medium rep3	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
129.0	100.0	GSM261046	after 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
71.1	100.0	GSM261045	after 3 days in mannitol medium rep1	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
0.0	29.9	GSM282033	Malting_day4_Harrington_rep4	GSE11200	Expression data from malting barley seeds
0.0	29.9	GSM68896	8 h control replicate 2	GSE3097	Barley1 salinity stress study
0.0	29.9	GSM261053	Bonus Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
0.0	29.9	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
0.0	29.9	GSM261051	Bonus Control rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
0.0	29.9	GSM398250	Martin_0d_rep2	GSE15970	Differentially Expressed Genes between Drought-tolerant and Drought-sensitive Barley Genotypes
0.0	29.9	GSM238409	Pericarp 4DAF; seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	3e-4	44	Contig20086_s_at	Contig20086	-	-	1e+0	At5g57570	-	C.G.	S.X.	Please select
0.01	3e-1	34	Contig10684_at	Contig10684	-	-	8e-17	At1g31780	-	C.G.	S.X.	Please select
0.02	1e+0	32	Contig8192_at	Contig8192	-	-	6e-8	At1g16610	SR45	C.G.	S.X.	Please select
0.01	1e+0	32	Contig6034_at	Contig6034	-	-	1e-3	At5g05140	transcription elongation factor-related	C.G.	S.X.	Please select
0.03	1e+0	32	Contig25818_at	Contig25818	-	-	1e+0	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.03	1e+0	32	Contig25024_at	Contig25024	-	-	2e+1	At5g51860	MADS-box protein (AGL72)	C.G.	S.X.	Please select
0.04	4e+0	30	HVSMEh0085O18r2_at	HVSMEh0085O18r2	-	-	3e+0	At3g52560	UEV1D-4 (UBIQUITIN E2 VARIANT 1D-4)	C.G.	S.X.	Please select
0.04	4e+0	30	HVSMEl0015H02r2_at	HVSMEl0015H02r2	-	-	1e+1	Atcg00380	-	C.G.	S.X.	Please select
0.03	4e+0	30	Contig24749_at	Contig24749	-	-	1e+0	At3g20100	CYP705A19	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e+0	32	Arabidopsis thaliana	At3g16440	820892	ATMLP-300B (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-300B)	myrosinase-binding protein-like protein (AtMLP-300B) mRNA,	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	5e-2	38	Glycine max	GmaAffx.88462.1.S1_at	AW203741	-	-	3e+0	At4g35170	-	C.G.	S.X.	Please select
0.05	1e+0	34	Oryza sativa	Os.16052.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	3e+0	32	Populus trichocarpa	PtpAffx.201702.1.S1_at	pmrna3392	hypothetical protein	-	1e-26	At1g03060	WD-40 repeat family protein / beige-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.47	1e-39	163	Triticum aestivum	Ta.15302.2.A1_x_at	BQ162679	-	-	4e+0	At5g04200	AtMC9 (metacaspase 9)	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1613043_at	CB921147	hypothetical protein LOC100261188	-	3e-1	At2g33800	ribosomal protein S5 family protein	C.G.	S.X.	Please select
0.04	4e+0	30	Zea mays	Zm.6318.1.A1_a_at	BM073937	-	-	1e+0	At2g18390	TTN5 (TITAN 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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