Gene omics information

Query gene ID	EBma08_SQ003_L03_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	EBma08_SQ003_L03_at	EBma08_SQ003_L03	-	-	6e-2	At2g40060	protein binding / structural molecule	S.X.	H.G.	Please select
0.61	78.7	Contig17900_at	Contig17900	-	-	6e+0	At4g05170	DNA binding / transcription factor	S.X.	H.G.	Please select
0.57	74.9	Contig10097_at	Contig10097	-	-	4e-1	At3g16450	jacalin lectin family protein	S.X.	H.G.	Please select
0.53	69.7	rbags18m16_at	rbags18m16	-	-	2e+0	At2g35790	unknown protein	S.X.	H.G.	Please select
0.50	66.9	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	S.X.	H.G.	Please select
0.48	63.2	HS05N06r_at	HS05N06r	-	-	9e-1	At1g79110	protein binding / zinc ion binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	97.1	GSM238414	Endosperm 8DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.8	97.0	GSM261021	ABA-Control-rep1	GSE10328	ABA experiment
4.8	97.0	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
4.7	96.9	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
4.6	96.8	GSM261030	Dicktoo-control-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.5	96.7	GSM238422	Endosperm 24 h; Seed germination; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.3	96.4	GSM161220	cold treatment rep2	GSE6993	Barley low temperature stress
4.3	96.4	GSM261033	Dicktoo-chilling-rep1	GSE10329	Low temperature stress in cv. Dicktoo
4.3	96.4	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
4.1	96.2	GSM161200	cold treatment rep1	GSE6993	Barley low temperature stress

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e-1	36	S78730_at	S78730	light-harvesting complex I	-	2e-3	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	C.G.	S.X.	Please select
0.03	4e-1	34	Contig2300_s_at	Contig2300	chlorophyll a/b-binding protein precursor	-	3e-5	At3g47470	LHCA4 (LIGHT-HARVESTING CHLOROPHYLL-PROTEIN COMPLEX I SUBUNIT A4)	C.G.	S.X.	Please select
0.02	2e+0	32	Contig10479_at	Contig10479	-	-	2e+0	At3g22820	allergen-related	C.G.	S.X.	Please select
0.03	2e+0	32	Contig10478_s_at	Contig10478	-	-	4e+0	At5g05820	phosphate translocator-related	C.G.	S.X.	Please select
0.01	7e+0	30	Contig4092_at	Contig4092	-	-	1e-2	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	C.G.	S.X.	Please select
0.02	7e+0	30	Contig7152_at	Contig7152	-	-	2e-34	At3g58600	-	C.G.	S.X.	Please select
0.03	7e+0	30	rbags17a06_s_at	rbags17a06	-	-	1e+0	At5g42300	UBL5 (UBIQUITIN-LIKE PROTEIN 5)	C.G.	S.X.	Please select
0.02	7e+0	30	Contig12766_at	Contig12766	-	-	2e-6	At1g51690	ATB ALPHA	C.G.	S.X.	Please select
0.03	7e+0	30	Contig15859_at	Contig15859	-	-	1e-10	At1g71820	SEC6	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-2	38	Arabidopsis thaliana	At2g40060	818594	protein binding / structural molecule	F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:plasma membrane, chloroplast envelope;MOPFBAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.62770.1.S1_s_at	BE583866	-	-	4e-2	At3g22620	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.04	1e-1	38	Oryza sativa	OsAffx.448.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.218485.1.S1_at	pmrna34115	hypothetical protein	-	6e-1	At4g35840	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	2e-7	56	Triticum aestivum	Ta.26974.1.A1_at	CD453357	-	-	3e-1	At4g21340	B70	C.G.	S.X.	Please select
0.04	1e+0	32	Vitis vinifera	1611368_at	CF203753.1	-	-	6e-18	At4g35090	CAT2 (CATALASE 2)	C.G.	S.X.	Please select
0.05	6e+0	30	Zea mays	ZmAffx.1329.1.S1_s_at	40794996-37	-	-	9e+0	At4g12990	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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