Gene omics information

Query gene ID	EBma03_SQ003_P07_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	EBma03_SQ003_P07_at	EBma03_SQ003_P07	-	-	3e+0	At2g39900	LIM domain-containing protein	S.X.	H.G.	Please select
0.32	40.3	Contig20777_at	Contig20777	-	-	1e-1	At3g47640	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.30	37.0	EBem04_SQ003_H15_at	EBem04_SQ003_H15	-	-	3e+0	At5g33806	unknown protein	S.X.	H.G.	Please select
0.29	35.5	Contig12986_at	Contig12986	-	-	7e-13	At3g28007	nodulin MtN3 family protein	S.X.	H.G.	Please select
0.25	28.9	EBem06_SQ002_C05_at	EBem06_SQ002_C05	-	-	4e+0	At5g55131	-	S.X.	H.G.	Please select
0.16	15.3	V00087.1_at	V00087.1	-	-	3e-1	At5g43525	-	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.0	98.4	GSM282031	Malting_day1_Harrington_rep1	GSE11200	Expression data from malting barley seeds
7.0	98.4	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
6.9	98.3	GSM261022	ABA-Control-rep2	GSE10328	ABA experiment
5.8	97.8	GSM261043	before 3 days in mannitol medium rep2	GSE10330	Transcriptome analysis of barley anthers: effect of mannitol treatment on microspore embryogenesis
5.1	97.3	GSM160823	19% SWC rep1	GSE6990	Barley drought stress
4.8	97.0	GSM238412	Endosperm 4DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
4.7	96.9	GSM282041	Control_dryseed_Morex_rep2	GSE11200	Expression data from malting barley seeds
4.6	96.8	GSM261025	ABA-Early-rep2	GSE10328	ABA experiment
4.2	96.3	GSM261040	Dicktoo-deacclimation-rep2	GSE10329	Low temperature stress in cv. Dicktoo
4.2	96.3	GSM161148	7% SWC rep3	GSE6990	Barley drought stress

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-2	38	Contig6233_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	C.G.	S.X.	Please select
0.05	2e-2	38	Contig6233_s_at	Contig6233	-	-	3e-8	At5g08790	ATAF2	C.G.	S.X.	Please select
0.04	3e-1	34	HVSMEn0012L05r2_at	HVSMEn0012L05r2	-	-	7e-2	At5g08520	myb family transcription factor	C.G.	S.X.	Please select
0.03	3e-1	34	Contig10767_at	Contig10767	-	-	3e-15	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	C.G.	S.X.	Please select
0.05	3e-1	34	HO14H22S_s_at	HO14H22S	-	-	2e-1	At3g06080	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig17507_at	Contig17507	-	-	2e+0	At3g05350	aminopeptidase/ hydrolase	C.G.	S.X.	Please select
0.03	1e+0	32	Contig23792_at	Contig23792	-	-	3e-1	At1g31060	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig11164_at	Contig11164	-	-	1e-45	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig9346_at	Contig9346	-	-	7e-1	At1g09300	metallopeptidase M24 family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At2g39900	818577	LIM domain-containing protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	9e-1	34	Glycine max	GmaAffx.83599.2.S1_at	CA936809	-	-	6e-11	At1g55110	AtIDD7 (Arabidopsis thaliana Indeterminate(ID)-Domain 7)	C.G.	S.X.	Please select
0.03	3e-1	36	Oryza sativa	OsAffx.22626.1.S1_s_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.249.521.S1_a_at	CF236370	hypothetical protein	-	8e-10	At1g16610	SR45	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.64	5e-54	210	Triticum aestivum	TaAffx.38571.1.A1_at	BJ218223	-	-	4e+0	At3g47150	F-box family protein	C.G.	S.X.	Please select
0.04	7e-1	32	Vitis vinifera	1616760_at	CF404188	hypothetical protein LOC100246863	-	3e-9	At1g02880	TPK1 (THIAMIN PYROPHOSPHOKINASE1)	C.G.	S.X.	Please select
0.03	1e+0	32	Zea mays	Zm.17645.1.A1_at	CK368768	hypothetical protein LOC100193071	-	3e-10	At4g38900	bZIP protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage