CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID EBes01_SQ002_O07_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.53 69.7 EBes01_SQ002_O07_at EBes01_SQ002_O07 - - 3e+0 At4g00880 auxin-responsive family protein S.X. H.G.
0.78 91.2 EBpi05_SQ004_F11_at EBpi05_SQ004_F11 - - 8e-1 At4g01440 nodulin MtN21 family protein S.X. H.G.
0.74 89.1 HA27D08r_at HA27D08r - - 5e-2 At3g04660 F-box family protein S.X. H.G.
0.64 80.9 Contig20148_s_at Contig20148 - - 2e-2 At2g33400 unknown protein S.X. H.G.
0.59 75.8 Contig14292_at Contig14292 - - 3e-1 At4g36170 unknown protein S.X. H.G.
0.59 75.8 Contig11432_at Contig11432 - - 6e-2 At4g08460 protein binding / zinc ion binding S.X. H.G.
0.58 74.9 Contig20825_at Contig20825 - - 5e-1 At1g62980 ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18) S.X. H.G.
0.44 58.9 EBes01_SQ003_N19_at EBes01_SQ003_N19 - - 2e-1 At5g57850 aminotransferase class IV family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
46.6 99.9 GSM238413 Endosperm 4DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
42.3 99.9 GSM238415 Endosperm 8DAF; Seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
38.6 99.9 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
10.8 99.2 GSM238414 Endosperm 8DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
6.8 98.3 GSM261021 ABA-Control-rep1 GSE10328 ABA experiment
5.6 97.7 GSM261025 ABA-Early-rep2 GSE10328 ABA experiment
4.6 96.8 GSM261022 ABA-Control-rep2 GSE10328 ABA experiment
4.0 96.0 GSM238411 Pericarp 8DAF; seed development; Rep 2 GSE9365 Expression data from barley maturing and germinating grains
3.8 95.7 GSM282038 Malting_kilned_Morex_rep1 GSE11200 Expression data from malting barley seeds
3.7 95.5 GSM261041 Dicktoo-deacclimation-rep3 GSE10329 Low temperature stress in cv. Dicktoo
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 2e-6 52 EBes01_SQ004_K24_at EBes01_SQ004_K24 - - 4e+0 At5g28180 kelch repeat-containing F-box family protein C.G. S.X.
0.02 4e-1 34 Contig9253_at Contig9253 - - 8e-1 At1g11360 universal stress protein (USP) family protein C.G. S.X.
0.03 1e+0 32 HT06N06u_at HT06N06u - - 1e+0 At4g32105 galactosyltransferase C.G. S.X.
0.02 1e+0 32 Contig2134_at Contig2134 - - 7e-4 At5g23660 MTN3 (Arabidopsis homolog of Medicago truncatula MTN3) C.G. S.X.
0.02 6e+0 30 Contig9415_at Contig9415 - - 2e+0 At5g08000 E13L3 (GLUCAN ENDO-1,3-BETA-GLUCOSIDASE-LIKE PROTEIN 3) C.G. S.X.
0.01 6e+0 30 Contig8904_at Contig8904 - - 2e-8 At4g19860 lecithin:cholesterol acyltransferase family protein / LACT family protein C.G. S.X.
0.02 6e+0 30 Contig7919_at Contig7919 - - 6e-23 At4g01690 PPOX C.G. S.X.
0.04 6e+0 30 HU05P03u_at HU05P03u - - 3e+0 At5g03930 unknown protein C.G. S.X.
0.02 6e+0 30 Contig395_s_at Contig395 - - 8e-111 At1g70490 ARFA1D C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e+0 32 Arabidopsis thaliana At4g00880 827989 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PO - - - C.G. S.X.
0.04 1e+0 34 Glycine max HgAffx.22720.1.S1_at BG310830 - - 9e-1 At3g58690 protein kinase family protein C.G. S.X.
0.04 2e+1 30 Oryza sativa OsAffx.30103.5.S1_s_at - - - 0 C.G. S.X.
0.05 4e+0 32 Populus trichocarpa PtpAffx.222163.1.S1_at pmrna39407 hypothetical protein - 4e-1 At3g14230 RAP2.2 C.G. S.X.
0.06 1e-5 50 Triticum aestivum Ta.6245.1.S1_at BJ306211 - - 5e+0 At1g36280 adenylosuccinate lyase, putative / adenylosuccinase, putative C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1614164_at CD802102 - - 3e+0 At1g59725 DNAJ heat shock protein, putative C.G. S.X.
0.04 1e+0 32 Zea mays Zm.3332.1.A1_at BM379802 putative serine type endopeptidase inhibitor - 4e+0 At3g11650 NHL2 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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