Gene omics information

Query gene ID	EBem10_SQ001_P13_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	EBem10_SQ001_P13_s_at	EBem10_SQ001_P13	-	-	8e+0	At5g66550	Maf family protein	S.X.	H.G.	Please select
0.83	94.0	Contig17080_at	Contig17080	-	-	9e+0	At5g64816	unknown protein	S.X.	H.G.	Please select
0.60	77.3	Contig7164_at	Contig7164	-	-	2e+0	At2g40435	-	S.X.	H.G.	Please select
0.59	75.8	HS04L14u_at	HS04L14u	-	-	2e+0	At2g21237	unknown protein	S.X.	H.G.	Please select
0.57	74.9	HVSMEl0010B18r2_at	HVSMEl0010B18r2	-	-	1e+0	At1g49130	zinc finger (B-box type) family protein	S.X.	H.G.	Please select
0.57	74.9	Contig12748_at	Contig12748	-	-	6e-2	At1g80130	binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
49.2	99.9	GSM282038	Malting_kilned_Morex_rep1	GSE11200	Expression data from malting barley seeds
33.6	99.9	GSM238431	Embryo 25DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
33.2	99.9	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
28.8	99.9	GSM238430	Embryo 25DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
24.4	99.8	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
19.7	99.7	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
19.1	99.7	GSM282030	Malting_day4_Harrington_rep2	GSE11200	Expression data from malting barley seeds
18.4	99.7	GSM238433	Embryo 0 h; Seed germination; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
16.7	99.6	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
16.1	99.6	GSM282039	Malting_day4_Morex_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	2e-79	293	Contig7161_at	Contig7161	-	-	2e-1	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	C.G.	S.X.	Please select
0.02	1e+0	32	Contig11028_at	Contig11028	-	-	3e-19	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	C.G.	S.X.	Please select
0.01	1e+0	32	Contig8703_at	Contig8703	-	-	2e-42	At3g21720	ICL (ISOCITRATE LYASE)	C.G.	S.X.	Please select
0.04	1e+0	32	HC108C09_SK_at	HC108C09_SK	-	-	1e+0	At2g21200	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Contig9811_at	Contig9811	-	-	6e-8	At4g31410	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Contig16767_at	Contig16767	-	-	2e+0	At5g65590	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.03	4e+0	30	HI01B12w_at	HI01B12w	-	-	6e-3	At1g50040	unknown protein	C.G.	S.X.	Please select
0.05	4e+0	30	S0001000018A01F1_at	S0001000018A01F1	-	-	3e+0	At2g24250	F-box family protein	C.G.	S.X.	Please select
0.03	4e+0	30	Contig22886_at	Contig22886	-	-	5e+0	At1g65352	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e+0	30	Arabidopsis thaliana	At5g66550	836787	Maf family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMPFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e+0	32	Glycine max	PsAffx.psMA006xH17f_at	PsAffx.psMA006xH17f	-	-	5e-1	At2g38880	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	C.G.	S.X.	Please select
0.03	2e+1	30	Oryza sativa	Os04g0522700	9632.m04237	-	-	3e-1	At1g04445	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+1	30	Populus trichocarpa	PtpAffx.82592.1.A1_at	CV240998	-	-	9e+0	At5g03790	HB51	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.30	7e-25	113	Triticum aestivum	Ta.5915.1.S1_at	BJ292123	-	-	7e+0	At5g03510	zinc finger (C2H2 type) family protein	C.G.	S.X.	Please select
0.04	9e+0	28	Vitis vinifera	1621654_at	CB979616	hypothetical protein LOC100256116	-	3e-4	At2g26830	emb1187 (embryo defective 1187)	C.G.	S.X.	Please select
0.04	3e+0	30	Zea mays	ZmAffx.70.1.A1_at	AI665164	-	-	8e-1	At2g37780	DC1 domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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