CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID EBem09_SQ005_B14_s_at

Gene name

Organism Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.79 91.4 EBem09_SQ005_B14_s_at EBem09_SQ005_B14 - - 5e-1 At2g38830 tumor susceptibility protein-related S.X. H.G.
0.70 86.0 Contig3541_s_at Contig3541 - - 2e-5 At2g36390 SBE2.1 (starch branching enzyme 2.1) S.X. H.G.
0.67 84.7 Contig19629_at Contig19629 - - 1e-26 At1g80900 magnesium transporter CorA-like family protein (MGT1) (MRS2) S.X. H.G.
0.66 81.5 HVSMEb0010L13r2_at HVSMEb0010L13r2 - - 1e+0 At5g19970 unknown protein S.X. H.G.
0.64 80.9 HS07P13u_s_at HS07P13u - - 5e-5 At3g16780 60S ribosomal protein L19 (RPL19B) S.X. H.G.
0.63 80.3 HI05M04r_s_at HI05M04r - - 1e-23 At2g33370 60S ribosomal protein L23 (RPL23B) S.X. H.G.
0.61 78.7 Contig15613_at Contig15613 - - 7e-16 At3g48860 unknown protein S.X. H.G.
0.60 77.3 HA03D07u_s_at HA03D07u - - 1e-1 At5g15530 BCCP2 (BIOTIN CARBOXYL CARRIER PROTEIN 2) S.X. H.G.
0.59 75.8 Contig10380_x_at Contig10380 - - 4e-1 At1g17880 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative S.X. H.G.
0.59 75.8 Contig10700_at Contig10700 - - 2e+0 At4g15990 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.4 98.8 GSM282031 Malting_day1_Harrington_rep1 GSE11200 Expression data from malting barley seeds
8.3 98.8 GSM282033 Malting_day4_Harrington_rep4 GSE11200 Expression data from malting barley seeds
5.4 97.5 GSM238430 Embryo 25DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
5.1 97.3 GSM282036 Malting_steeped_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.6 96.8 GSM282039 Malting_day4_Morex_rep2 GSE11200 Expression data from malting barley seeds
4.5 96.7 GSM282037 Malting_day1_Morex_rep2 GSE11200 Expression data from malting barley seeds
3.8 95.7 GSM282032 Malting_day1_Morex_rep1 GSE11200 Expression data from malting barley seeds
3.4 94.8 GSM238412 Endosperm 4DAF; Seed development; Rep 1 GSE9365 Expression data from barley maturing and germinating grains
3.0 93.8 GSM282025 Control_dryseed_Morex_rep1 GSE11200 Expression data from malting barley seeds
3.0 93.8 GSM282035 Malting_day4_Morex_rep1 GSE11200 Expression data from malting barley seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.39 1e-104 377 Contig4257_at Contig4257 - - 5e-4 At4g02450 glycine-rich protein C.G. S.X.
0.04 9e-1 32 HW08J24V_at HW08J24V - - 5e+0 At4g09840 unknown protein C.G. S.X.
0.04 9e-1 32 Contig16699_at Contig16699 - - 3e-1 At1g33640 unknown protein C.G. S.X.
0.02 4e+0 30 Contig1548_at Contig1548 - - 1e-54 At5g10360 EMB3010 (embryo defective 3010) C.G. S.X.
0.04 4e+0 30 Contig26243_s_at Contig26243 - - 4e-6 At3g17300 - C.G. S.X.
0.04 4e+0 30 Contig12517_at Contig12517 - - 5e-6 At3g17300 - C.G. S.X.
0.01 4e+0 30 Contig6102_at Contig6102 - - 1e-15 At5g49820 emb1879 (embryo defective 1879) C.G. S.X.
0.02 4e+0 30 Contig4704_at Contig4704 - - 6e-53 At4g17170 RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C) C.G. S.X.
0.02 4e+0 30 Contig1551_s_at Contig1551 - - 3e-36 At4g31700 RPS6 (RIBOSOMAL PROTEIN S6) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-1 34 Arabidopsis thaliana At2g38830 818467 tumor susceptibility protein-related F:molecular_function unknown;P:protein modification process, protein transport;C:endomembrane system;MFPO - - - C.G. S.X.
0.04 1e+1 30 Glycine max GmaAffx.70986.1.S1_at AW186285 - - 5e-2 At5g66110 metal ion binding C.G. S.X.
0.04 4e+0 32 Oryza sativa Os08g0199900 9636.m00956 - - 4e+0 At5g66980 transcriptional factor B3 family protein C.G. S.X.
0.04 3e+0 32 Populus trichocarpa PtpAffx.207765.1.S1_at pmrna15447 hypothetical protein - 9e-1 At4g18330 eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative C.G. S.X.
0.15 1e-23 109 Triticum aestivum Ta.3376.1.S1_s_at BJ308421 - - 2e-1 At4g02450 glycine-rich protein C.G. S.X.
0.05 2e+0 30 Vitis vinifera 1621134_at CF511905 - - 6e-1 At5g03230 unknown protein C.G. S.X.
0.04 1e+1 28 Zea mays ZmAffx.754.1.A1_at AI745921 - - 2e-1 At1g33960 AIG1 (AVRRPT2-INDUCED GENE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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