Gene omics information

Query gene ID	EBem09_SQ004_B23_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	EBem09_SQ004_B23_s_at	EBem09_SQ004_B23	-	-	2e+0	At4g15750	invertase/pectin methylesterase inhibitor family protein	S.X.	H.G.	Please select
0.67	84.7	Contig4282_at	Contig4282	-	-	2e+0	At4g09460	ATMYB6	S.X.	H.G.	Please select
0.67	84.7	Contig568_s_at	Contig568	GRP94 homologue	-	4e-2	At1g06240	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig4283_at	Contig4283	-	-	9e-1	At2g40510	40S ribosomal protein S26 (RPS26A)	S.X.	H.G.	Please select
0.50	66.9	Contig20987_at	Contig20987	-	-	1e-3	At4g02610	tryptophan synthase, alpha subunit, putative	S.X.	H.G.	Please select
0.50	66.9	Contig5689_at	Contig5689	-	-	8e-1	At5g09470	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.7	99.5	GSM261065	Xantha s-46 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
13.7	99.5	GSM261066	Xantha s-46 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
12.3	99.4	GSM261067	Xantha s-46 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
11.5	99.3	GSM261071	Albina f-17 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.8	99.2	GSM261078	Albina e-16 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.7	99.2	GSM261077	Albina e-16 Hardened rep1	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
10.7	99.2	GSM261072	Albina f-17 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.8	99.1	GSM261060	Xantha b-12 Hardened rep2	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.7	99.0	GSM261079	Albina e-16 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1
9.3	99.0	GSM261073	Albina f-17 Hardened rep3	GSE10332	Transcriptome Analysis of Cold Acclimation in Barley Albina and Xantha Mutants1

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.30	4e-145	511	Contig5688_at	Contig5688	-	-	1e-5	At5g07500	PEI1	C.G.	S.X.	Please select
0.50	4e-62	236	Contig5687_s_at	Contig5687	-	-	7e+0	At3g52960	peroxiredoxin type 2, putative	C.G.	S.X.	Please select
0.04	3e-1	34	EBes01_SQ004_M23_at	EBes01_SQ004_M23	-	-	6e-2	At1g68300	universal stress protein (USP) family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Contig6040_at	Contig6040	-	-	1e-18	At5g38830	tRNA synthetase class I (C) family protein	C.G.	S.X.	Please select
0.04	1e+0	32	HS05C08u_at	HS05C08u	-	-	9e-1	At1g66245	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Contig11005_s_at	Contig11005	-	-	3e+0	At1g24350	-	C.G.	S.X.	Please select
0.02	1e+0	32	Contig11005_at	Contig11005	-	-	3e+0	At1g24350	-	C.G.	S.X.	Please select
0.02	4e+0	30	Contig23034_at	Contig23034	-	-	6e-1	At3g52105	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Contig16765_at	Contig16765	-	-	2e-2	At3g54090	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e+0	32	Arabidopsis thaliana	At4g15750	827253	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e+0	32	Glycine max	Gma.13747.1.A1_at	CD404869	-	-	2e+0	At5g16120	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.03	5e+0	32	Oryza sativa	Os11g0586900	AK071632.1	-	ADP-ribosylation factor (Fragment)	8e-3	At3g22950	ATARFC1 (ADP-ribosylation factor C1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	8e-1	34	Populus trichocarpa	PtpAffx.210029.1.S1_at	pmrna19765	hypothetical protein	-	6e-1	At3g19900	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	3e-21	101	Triticum aestivum	Ta.7467.2.S1_x_at	BQ168791	-	-	2e+0	At3g02370	unknown protein	C.G.	S.X.	Please select
0.06	7e-1	32	Vitis vinifera	1617134_at	CA811224	hypothetical protein LOC100264012	-	2e+0	At1g76980	-	C.G.	S.X.	Please select
0.04	4e+0	30	Zea mays	ZmAffx.106.1.A1_at	AI665540	-	-	3e+0	At4g14060	major latex protein-related / MLP-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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