Gene omics information

Query gene ID	EBem09_SQ001_L06_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	75.8	EBem09_SQ001_L06_s_at	EBem09_SQ001_L06	-	-	5e-1	At5g16470	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.71	87.1	Contig25107_at	Contig25107	-	-	2e+0	At4g39235	unknown protein	S.X.	H.G.	Please select
0.67	84.7	Contig16073_at	Contig16073	-	-	3e-2	At5g37200	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.61	78.7	Contig22861_at	Contig22861	-	-	7e+0	At3g59880	unknown protein	S.X.	H.G.	Please select
0.53	69.7	HVSMEb0001F21r2_x_at	HVSMEb0001F21r2	-	-	4e+0	At5g48170	SLY2 (SLEEPY2)	S.X.	H.G.	Please select
0.52	68.3	HW08B21u_s_at	HW08B21u	-	-	1e+1	At5g23903	unknown protein	S.X.	H.G.	Please select
0.47	62.2	Contig272_s_at	Contig272	-	-	5e-1	At3g45230	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.46	61.0	Contig14012_at	Contig14012	-	-	7e-1	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	S.X.	H.G.	Please select
0.46	61.0	Contig9703_at	Contig9703	-	-	3e+0	At2g37200	integral membrane protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.8	95.7	GSM419983	Seed_Rep3	GSE16754	Comparative transcriptional profiling of organs of the barley spike
3.8	95.7	GSM440977	Control seed_Rep3	GSE17669	Gene expression in the barley spike during drought stress
3.0	93.8	GSM382232	Root_Hg1	GSE15295	Mercury toxicity in barley roots
2.7	92.7	GSM71155	Morex stress and unstress replicate 2	GSE3170	Barley single feature polymorphisms and drought stress gene expression
2.6	92.3	GSM419982	Seed_Rep2	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.6	92.3	GSM440976	Control seed_Rep2	GSE17669	Gene expression in the barley spike during drought stress
2.6	92.3	GSM282040	Malting_kilned_Morex_rep2	GSE11200	Expression data from malting barley seeds
2.6	92.3	GSM419981	Seed_Rep1	GSE16754	Comparative transcriptional profiling of organs of the barley spike
2.6	92.3	GSM440975	Control seed_Rep1	GSE17669	Gene expression in the barley spike during drought stress
2.6	92.3	GSM382233	Root_Hg2	GSE15295	Mercury toxicity in barley roots

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.47	2e-147	519	Contig2778_at	Contig2778	-	-	4e-7	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	C.G.	S.X.	Please select
0.03	3e-1	34	Contig6407_at	Contig6407	-	-	8e-6	At5g48220	indole-3-glycerol phosphate synthase, putative	C.G.	S.X.	Please select
0.03	3e-1	34	Contig6407_s_at	Contig6407	-	-	8e-6	At5g48220	indole-3-glycerol phosphate synthase, putative	C.G.	S.X.	Please select
0.01	3e-1	34	Contig13638_at	Contig13638	-	-	4e+0	At4g25660	unknown protein	C.G.	S.X.	Please select
0.05	1e+0	32	HV_CEa0015F23r2_x_at	HV_CEa0015F23r2	-	-	3e+0	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select
0.05	1e+0	32	HV_CEa0015F23r2_at	HV_CEa0015F23r2	-	-	3e+0	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	C.G.	S.X.	Please select
0.04	1e+0	32	HZ45N21r_at	HZ45N21r	-	-	3e+0	At3g49330	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Contig13541_at	Contig13541	-	-	2e+0	At5g56600	PRF3 (PROFILIN 3)	C.G.	S.X.	Please select
0.02	4e+0	30	Contig23392_at	Contig23392	-	-	3e-3	At5g24010	protein kinase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	5e-1	34	Arabidopsis thaliana	At5g16470	831508	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;POM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.10	1e-2	40	Glycine max	PsAffx.CL844Contig1_s_at	PsAffx.CL844Contig1	-	-	4e+0	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	C.G.	S.X.	Please select
0.18	8e-11	67	Oryza sativa	Os02g0760300	CB682356	-	Immunophilin	2e-8	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	3e+0	32	Populus trichocarpa	Ptp.7844.1.S1_s_at	DN499698	-	-	4e-1	At2g26430	RCY1 (ARGININE-RICH CYCLIN 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	3e-80	297	Triticum aestivum	Ta.2848.1.S1_at	BQ605815	-	-	1e-7	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	C.G.	S.X.	Please select
0.10	6e-1	32	Vitis vinifera	1614941_s_at	CA809258	hypothetical protein LOC100265806	-	9e-17	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	C.G.	S.X.	Please select
0.05	1e-6	52	Zea mays	Zm.6799.1.A1_at	CF040477	immunophilin	-	2e+0	At5g64350	FKBP12 (FK506-BINDING PROTEIN)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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