Gene omics information

Query gene ID	EBem09_SQ001_B21_s_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.1	EBem09_SQ001_B21_s_at	EBem09_SQ001_B21	-	-	2e+0	At5g36920	unknown protein	S.X.	H.G.	Please select
0.71	87.1	rbags18e07_s_at	rbags18e07	-	-	4e-1	At3g58170	BS14A (BET1P/SFT1P-LIKE PROTEIN 14A)	S.X.	H.G.	Please select
0.67	84.7	Contig18703_at	Contig18703	-	-	1e+0	At5g48205	zinc ion binding	S.X.	H.G.	Please select
0.61	78.7	Contig7221_s_at	Contig7221	-	-	6e+0	At5g47610	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.47	62.2	Contig19492_at	Contig19492	-	-	5e-1	At5g41340	UBC4 (UBIQUITIN CONJUGATING ENZYME 4)	S.X.	H.G.	Please select
0.44	58.9	HA12A08u_s_at	HA12A08u	-	-	5e-2	At1g22780	PFL (POINTED FIRST LEAVES)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.6	95.3	GSM146376	Maythorpe shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
3.5	95.1	GSM130800	control, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.3	94.6	GSM130799	control, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
3.3	94.6	GSM130802	salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.2	94.3	GSM130804	JA, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
3.1	94.1	GSM130801	salinity stress, biological rep1	GSE5605	Expression data from barley under salinity stress and JA treatment
2.8	93.1	GSM146374	Golden Promise shoot Salt, biological rep 3	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8	93.1	GSM130806	JA and salinity stress, biological rep2	GSE5605	Expression data from barley under salinity stress and JA treatment
2.8	93.1	GSM146373	Golden Promise shoot Salt, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise
2.8	93.1	GSM146370	Golden Promise shoot Control, biological rep 2	GSE6325	Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.53	9e-87	317	HS08B03u_s_at	HS08B03u	-	-	3e-22	At5g58420	40S ribosomal protein S4 (RPS4D)	C.G.	S.X.	Please select
0.01	5e-2	36	Contig6338_at	Contig6338	-	-	3e-1	At5g10890	myosin heavy chain-related	C.G.	S.X.	Please select
0.03	2e-1	34	Contig11831_at	Contig11831	-	-	3e-2	At5g58710	ROC7	C.G.	S.X.	Please select
0.02	2e-1	34	Contig13725_at	Contig13725	3-beta-glucuronosyltransferase	-	5e-8	At1g27600	glycosyl transferase family 43 protein	C.G.	S.X.	Please select
0.03	8e-1	32	Contig15040_at	Contig15040	-	-	1e+0	At5g36920	unknown protein	C.G.	S.X.	Please select
0.01	3e+0	30	Contig9749_at	Contig9749	-	-	2e-14	At1g52310	protein kinase family protein / C-type lectin domain-containing protein	C.G.	S.X.	Please select
0.02	3e+0	30	Contig18000_at	Contig18000	knotted 1	-	1e-33	At1g62360	STM (SHOOT MERISTEMLESS)	C.G.	S.X.	Please select
0.04	3e+0	30	HD05L07r_at	HD05L07r	-	-	3e-1	At2g35270	DNA-binding protein-related	C.G.	S.X.	Please select
0.02	3e+0	30	Contig466_at	Contig466	-	-	6e-26	At3g63490	ribosomal protein L1 family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	2e+0	32	Arabidopsis thaliana	At5g36920	833660	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	6e-1	34	Glycine max	HgAffx.17603.1.S1_at	CB278787	-	-	3e+0	At1g56180	unknown protein	C.G.	S.X.	Please select
0.09	2e-7	56	Oryza sativa	Os02g0105900	AK102423.1	-	40S ribosomal protein S4	4e-125	At5g58420	40S ribosomal protein S4 (RPS4D)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e-1	34	Populus trichocarpa	PtpAffx.127916.1.A1_at	CV239786	-	-	5e+0	At5g07060	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	2e-28	125	Triticum aestivum	TaAffx.52323.1.S1_at	CA709364	-	-	4e+0	At5g27238	-	C.G.	S.X.	Please select
0.04	8e+0	28	Vitis vinifera	1617958_at	CA818710	-	-	2e-1	At5g57655	xylose isomerase family protein	C.G.	S.X.	Please select
0.05	3e+0	30	Zea mays	ZmAffx.712.1.A1_at	AI738386	-	-	3e+0	At4g38092	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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