Gene omics information

Query gene ID	EBem06_SQ003_C15_x_at
Gene name
Organism	Hordeum vulgare

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	94.0	EBem06_SQ003_C15_x_at	EBem06_SQ003_C15	-	-	9e-1	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.50	66.9	HU13P05r_at	HU13P05r	-	-	1e+0	At3g61880	CYP78A9 (CYTOCHROME P450 78A9)	S.X.	H.G.	Please select
0.50	66.9	Contig9006_at	Contig9006	-	-	6e-5	At1g09850	XBCP3 (xylem bark cysteine peptidase 3)	S.X.	H.G.	Please select
0.06	4.8	Contig11496_at	Contig11496	-	-	5e-11	At1g23280	MAK16 protein-related	S.X.	H.G.	Please select
0.01	1.1	Contig16560_at	Contig16560	-	-	8e-2	At1g69210	unknown protein	S.X.	H.G.	Please select
0.01	1.1	Contig2515_at	Contig2515	-	-	6e-54	At1g68010	HPR	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
23.9	99.8	GSM238429	Embryo 16DAF; Seed development; Rep 2	GSE9365	Expression data from barley maturing and germinating grains
18.8	99.7	GSM238428	Embryo 16DAF; Seed development; Rep 1	GSE9365	Expression data from barley maturing and germinating grains
15.4	99.6	GSM282032	Malting_day1_Morex_rep1	GSE11200	Expression data from malting barley seeds
13.7	99.5	GSM282020	Malting_day4_Legacy_rep 3	GSE11200	Expression data from malting barley seeds
13.2	99.4	GSM282028	Malting_day1_Merit_rep1	GSE11200	Expression data from malting barley seeds
12.9	99.4	GSM282035	Malting_day4_Morex_rep1	GSE11200	Expression data from malting barley seeds
11.5	99.3	GSM282021	Malting_day4_Legacy_rep 2	GSE11200	Expression data from malting barley seeds
11.1	99.2	GSM282023	Malting_day4_Merit_rep3	GSE11200	Expression data from malting barley seeds
10.9	99.2	GSM261028	ABA-Late-rep2	GSE10328	ABA experiment
9.7	99.0	GSM282024	Malting_day4_Merit_rep2	GSE11200	Expression data from malting barley seeds

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	876	EBem06_SQ003_C15_at	EBem06_SQ003_C15	-	-	9e-1	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.59	1e-106	385	Contig104_x_at	Contig104	-	-	7e-2	At3g07230	wound-responsive protein-related	C.G.	S.X.	Please select
0.34	6e-99	359	Contig652_at	Contig652	-	-	5e-78	At1g70490	ARFA1D	C.G.	S.X.	Please select
0.56	2e-98	357	Contig27_s_at	Contig27	-	-	5e-2	At3g07230	wound-responsive protein-related	C.G.	S.X.	Please select
0.34	4e-72	270	Contig847_at	Contig847	-	-	6e-1	At4g00460	Rho guanyl-nucleotide exchange factor	C.G.	S.X.	Please select
0.04	4e-4	44	Contig11884_at	Contig11884	-	-	2e+1	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	C.G.	S.X.	Please select
0.06	2e-3	42	HVSMEa0002K15r2_s_at	HVSMEa0002K15r2	-	-	9e+0	At4g24920	protein transport protein SEC61 gamma subunit, putative	C.G.	S.X.	Please select
0.06	2e-3	42	HVSMEa0002K15r2_x_at	HVSMEa0002K15r2	-	-	9e+0	At4g24920	protein transport protein SEC61 gamma subunit, putative	C.G.	S.X.	Please select
0.02	3e-2	38	Contig7041_at	Contig7041	-	-	2e-7	At1g51760	IAR3 (IAA-ALANINE RESISTANT 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	9e-1	34	Arabidopsis thaliana	At5g60460	836167	sec61beta family protein	F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.1684.1.A1_at	CK351009	-	-	3e+0	At2g20597	-	C.G.	S.X.	Please select
0.13	2e-12	73	Oryza sativa	Os12g0405700	AK061920.1	-	Wound-induced basic protein	1e-6	At3g07230	wound-responsive protein-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	3e-7	56	Populus trichocarpa	PtpAffx.89587.1.S1_at	AJ777236	hypothetical protein	-	2e-8	At3g07230	wound-responsive protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.45	6e-73	274	Triticum aestivum	Ta.28739.1.S1_x_at	BJ246370	-	-	8e-2	At3g07230	wound-responsive protein-related	C.G.	S.X.	Please select
0.03	1e+0	32	Vitis vinifera	1620435_at	CD721251	-	-	9e-2	At1g12290	disease resistance protein (CC-NBS-LRR class), putative	C.G.	S.X.	Please select
0.12	2e-12	71	Zea mays	Zm.7028.1.S1_at	CF016721	hypothetical protein LOC100278953	-	1e+0	At3g07230	wound-responsive protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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